DreINT0086458 @ danRer10
Intron Retention
Gene
ENSDARG00000098936 | kif5aa
Description
kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
Coordinates
chr9:273738-274444:-
Coord C1 exon
chr9:274338-274444
Coord A exon
chr9:273840-274337
Coord C2 exon
chr9:273738-273839
Length
498 bp
Sequences
Splice sites
5' ss Seq
AGAGTCAGT
5' ss Score
-0.66
3' ss Seq
TATCATCGCATGTGTTGCAGTAA
3' ss Score
5.71
Exon sequences
Seq C1 exon
AAGGCCGCTGTTCGTCCAGCTCTGCATGCGGAGTCTCGTCAGACGCAGCTCAGCCGCCTGCGGGATGAAATTAACGAGAAGCAGAGACTCATCGACGAGCTCACAGA
Seq A exon
GTCAGTCTCACTCCTCGGACATTAACCCAATAATACTTACTGCAGACACACTGCAGAAAAGGCTTTCCTTGCTTAGAGATTTTGTCCTGTTTCCAGTCTAAATGTCTAAACATTCTTAAATCAAGCAGCATTTTCTAGACAAGCAAAACATCTAGAGTTGAGTTCAAACAGAATGAGTCGAAATGTTTTTGTTTTCCGTAAAACAAGCAGAATAATCTGACAATGAGGGAAGAGAAATAATCTTACTGTATGTCGAAATGAAAAGCTACATTATTTTTCCTGCGCCACAGCCAGATTATTTTGTTGCTTTAAGGAGAAGTTCACCTCATTTTGACCCCAGTGTTTTGCTTGTCTTGAGACAAAAAGAAAAAAAAAGGCAAAAACTCTAATTAAGGCAATCTTTTCTTCATAGCATTACACATTTAGTCAGATATAACGTGTGTGTGTGTGTGTGTGTGTTGTAATGAGGTGTTAATGGTATCATCGCATGTGTTGCAG
Seq C2 exon
TAAGAACCAGGCTCTGGAGTTGGAGCTGGCTCACGTGCGCTCCAGTTTCAGCAATCTGAAGCTGCAGGACGACAGCAAGAGCGCCTGTCTGGAGCAGATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098936:ENSDART00000165228:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCGCTGTTCGTCCAG
R:
GACATCTGCTCCAGACAGGC
Band lengths:
209-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]