BtaINT0082147 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33658669-33659208:+
Coord C1 exon
chr13:33658669-33658740
Coord A exon
chr13:33658741-33659103
Coord C2 exon
chr13:33659104-33659208
Length
363 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
ATTGATTGATCTTTTTCTAGAGT
3' ss Score
5.65
Exon sequences
Seq C1 exon
GCAAAGGAACTTCAGACTTTACACAACCTGCGGAAGCTCTTTGTTCAGGACCTGGCCACCAGGGTTAAAAAG
Seq A exon
GTAATAACATAATACCAGGGTGGATATTTATGTAGTAGTGCTTGTTGTTTTTATTGTTCATCGCTAAGTCATGTCTGACTCTTTGCAACACCATGGACTGCAGCACACCTTAAAGCTCCTCTGACCTCCTCTGTCTCCCGGAGTTTGCTCACAGTCATGTCCGTTGAGCCAGTGATGCTATCTAACCATCACGTCCTCTGCCACCCCCTCCCTTCTCCTTTCTCCTTACAGTAGTGCTTTCTGTGTCTGATTGTATTCACAAGTGAAATAACTTTACATTGTCGTAACAGCTTTGGTAGTAAACTTAGACCTTTTATTTGATCCAGTAATACTTTTTCATAGCATTGATTGATCTTTTTCTAG
Seq C2 exon
AGTGCTGAGATTGATTCAGATGACACTGGAGGCAGTGCTGCTCAGAAGCAGAAAATCTCCTTTCTTGAAAATAATCTGGAACAACTCACCAAAGTCCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280:ENSBTAT00000033899:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development