DreINT0086516 @ danRer10
Intron Retention
Gene
ENSDARG00000103394 | kif5bb
Description
kinesin family member 5B, b [Source:ZFIN;Acc:ZDB-GENE-070629-4]
Coordinates
chr12:41053070-41054750:+
Coord C1 exon
chr12:41053070-41053141
Coord A exon
chr12:41053142-41054645
Coord C2 exon
chr12:41054646-41054750
Length
1504 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTTATTACAATGTTTTTCAGAGC
3' ss Score
7.49
Exon sequences
Seq C1 exon
GCCAAAGAGCTGCAGACTCTTCATAATCTGAGGAAACTCTTTGTTCAGGATCTGGCAACACGAGTGAAGAAG
Seq A exon
GTACAATTGTTATGAATGCATTCTGCACAATGTGGATTTATTATGCTTATGTGTGCGGGAAAAAGTGGATTTATATGAGAGTGGGGGACATTTTCTTACTTTTTATGTGCCAATTTAATTGTTGGATGGGAAATATAGAACAGGATATTTCTTAATTTTTGGTTCTTTTTTTATTATTAGTTTCTTTTTATTTTTTATTTTGTACATTTCTAAAATAATTGTATACTTGTAATTTTACAATTATAATTTTACAATTTTAAGTTAATTATTAGTCTTTGAAATATTGACTTACTTTTAATTTACAATTTAGTTTCTCTATTTATGTTTTTTAATAGCCTTTTTAATTATTTACTTTTACTATTTAAAAAAATAGTCTATTTAATTTTTATATTTAATTTTTACAGAAGTTATATAATAAACAACATTTTTATGCAGTTTTACTTTTTTTATGTGCGAATTAACATTTGCATGGGAAATATAGAACAGTGAAAAAATATCATAATAATAATAATATTATTATTATTATTATTATTATTATTATTTAACATTTTTTATGTCCATTTCTGAAATTATGTTATACTTACAATTTTAAGAATTTCACTTAATCTTCTAAACATTATCTTTATAATTTAGATTTCTTTATTAACCTTTGAAATTGTTTACCTAGGTTTTTATGTTTTAGTTTATATTCTACGTTTATAATAAAAAATCTACAAATTCATAATAAATTATTAATAATAATTAGTTAATAATAAAATATTAAATTTTTCTGAAATATATTTAATTTTTGATATTTTTTTAAATTATCAGATAATAAATAAAATTTCTATACGTTTAAAAAATTTCTGTGCCAATTAATTGTTGGATGGAAAATATAGACCAGCGCCTGCTCCTTCATTTTACTTTTCTATTATTATTATTATTATTATTTTCTTTTTTGTACATTTCTAAAATAATTATATGCTTACAATTTTACAAATTTAATTAATTTTATTATTAATCTTTTACATATTAACTATCATTTAGCTTATATTGTATATTCTATTCTGTTTTATTTTTTGTTTTATTTTTTTATGATTTTCTTTAATTTCATTTTCATTTTATTTTTCCATTAATATTTAGATTTTTTTTTATTAGCTTTTTAAATTACTTAGAATTAAAACTAAATAGTCTACATTACATGATAAAAATACATAGTCCATTTAATTTTTTATAAAATATGTTTAATCTTTTAAGTAATTGAATTTATCAGAAATAAATACAATTTTTGTCAATTATACATATAAAATTTCTTTAAATGAGAAATTCTTTAAAAATGTATGTTTTAAATTTAGTCGAATCTTCTGAGTGTGTGTTTATTTTATTTTATTATTGTTTTTATTACCGGGAGCTTTTACTTTGTCACAGCCATCAAAGCTAAAGGACTAGACATTATAAAACTCCAGTTATACAGTTATCGACCAGACAGGCCTTAATTATGATTATTTATTACAATGTTTTTCAG
Seq C2 exon
AGCGCTGAGATGGACTCGGACGACACTGGAGGCAGTGCAGCCCAAAAGCAGAAGATCTCATTCCTCGAGAACAACCTTGAACAGCTCACTAAAGTGCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103394:ENSDART00000170976:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]