GgaINT0101245 @ galGal4
Intron Retention
Gene
ENSGALG00000007215 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr2:14159173-14159519:+
Coord C1 exon
chr2:14159173-14159244
Coord A exon
chr2:14159245-14159414
Coord C2 exon
chr2:14159415-14159519
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCATGCCTTTGTTACTGCAGAGT
3' ss Score
6.91
Exon sequences
Seq C1 exon
GCTAAAGAACTTCAGACTCTCCACAACCTTCGGAAGCTATTTGTTCAGGATCTGGCTACTAGAGTGAAAAAG
Seq A exon
GTAATGTGGTGCTGTAATGGTACTTGGTGTCTCTGAGATTGCTGTGTACATTTCAGTTTAGAACTGAGTTAGAAATTGATCTGTATTTTTTTTTCTGCTTTGATTTTAATATGTAAATTCAGATTTGTACTCAGTATCTTTTCTCCCTTCCCATGCCTTTGTTACTGCAG
Seq C2 exon
AGTGCTGAGATTGACTCGGATGATACAGGAGGCAGCGCTGCACAAAAACAGAAGATTTCTTTCCTTGAGAATAATCTTGAACAGCTTACCAAGGTTCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215:ENSGALT00000011680:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCAGACTCTCCACAACCT
R:
TGCTTGTGAACCTTGGTAAGCT
Band lengths:
170-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]