GgaINT0101245 @ galGal3
Intron Retention
Gene
ENSGALG00000007215 | E1C3A1_CHICK
Description
NA
Coordinates
chr2:14144560-14144906:+
Coord C1 exon
chr2:14144560-14144631
Coord A exon
chr2:14144632-14144801
Coord C2 exon
chr2:14144802-14144906
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCATGCCTTTGTTACTGCAGAGT
3' ss Score
6.91
Exon sequences
Seq C1 exon
GCTAAAGAACTTCAGACTCTCCACAACCTTCGGAAGCTATTTGTTCAGGATCTGGCTACTAGAGTGAAAAAG
Seq A exon
GTAATGTGGTGCTGTAATGGTACTTGGTGTCTCTGAGATTGCTGTGTACATTTCAGTTTAGAACTGAGTTAGAAATTGATCTGTATTTTTTTTTCTGCTTTGATTTTAATATGTAAATTCAGATTTGTACTCAGTATCTTTTCTCCCTTCCCATGCCTTTGTTACTGCAG
Seq C2 exon
AGTGCTGAGATTGACTCGGATGATACAGGAGGCAGCGCTGCACAAAAACAGAAGATTTCTTTCCTTGAGAATAATCTTGAACAGCTTACCAAGGTTCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215:ENSGALT00000011680:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCAGACTCTCCACAACCT
R:
TGCTTGTGAACCTTGGTAAGCT
Band lengths:
170-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]