RnoINT0079521 @ rn6
Intron Retention
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54209387-54209739:+
Coord C1 exon
chr17:54209387-54209458
Coord A exon
chr17:54209459-54209634
Coord C2 exon
chr17:54209635-54209739
Length
176 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
CTTTGTCTCTGTGCTGTCAGAGC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GCAAAAGAACTTCAGACTTTACACAACCTGCGCAAGCTCTTTGTTCAGGACTTGGCTACCAGGGTGAAAAAG
Seq A exon
GTGATCACAGAGTGCCCAGGGCTGCTTGTACAAATGGTGCTTGCTGTGTGTGTGGTGCTTTAAGAGTATGTTACGTGGTTGTGCCCGTGTGAGTCTGGGACGTCCGTGTTTGTATGGAGGAAGCTTGGGTCCTCTGGTCTTTACACTTCCTTACTGCTTTGTCTCTGTGCTGTCAG
Seq C2 exon
AGCGCTGAGGTGGACTCAGACGACACTGGCGGCAGTGCTGCACAGAAGCAGAAAATCTCCTTCCTTGAAAACAATCTGGAGCAGCTCACCAAAGTGCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466:ENSRNOT00000023861:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAGACTTTACACAACCTGC
R:
CTGCTTGTGCACTTTGGTGAG
Band lengths:
170-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]