HsaINT0088130 @ hg38
Intron Retention
Gene
ENSG00000170759 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr10:32018052-32018387:-
Coord C1 exon
chr10:32018316-32018387
Coord A exon
chr10:32018157-32018315
Coord C2 exon
chr10:32018052-32018156
Length
159 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TACTTACCTTCTTTTCTCAGAGT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCAAAAGAACTTCAGACTTTACACAACCTGCGCAAACTCTTTGTTCAGGACCTGGCTACAAGAGTTAAAAAG
Seq A exon
GTAATGTAACTATGCCGAGGTAGGCGTTTGCATAAATGGTGCTTACTTCTAGGTAATTATTTGTATTCAAAGTGAAATAACTTTACAGTCACGTCAATTTTTGTATAGTTAAGCTTAGTTTTTTTTAATTTTTTTGTAATACTTACCTTCTTTTCTCAG
Seq C2 exon
AGTGCTGAGATTGATTCTGATGACACCGGAGGCAGCGCTGCTCAGAAGCAAAAAATCTCCTTTCTTGAAAATAATCTTGAACAGCTCACTAAAGTGCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170759:ENST00000302418:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGAACTTCAGACTTTACACA
R:
AGTGAGCTGTTCAAGATTATTTTCA
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development