BtaINT0089004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24512078-24512728:-
Coord C1 exon
chr2:24512650-24512728
Coord A exon
chr2:24512520-24512649
Coord C2 exon
chr2:24512078-24512519
Length
130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
TCGGTCTTGTGTTGTTTTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
AGCCAATTGTAACCGAGGGATCCCCTGAATTTAAAGTGCTGGAGGACTCGTGGACTGTGGTCTCCTTGGACAATCAAAG
Seq A exon
GTGTTTGCTTTCTGCCGGGTTGCTTTTAAATTGTCCTGGAAGGGCAGGTTCGTCCCACGACGCGGGCGAGCTGCTGATCCCTGCCCCGCCGGCGCTTGAGCTCGCTGATCTCGGTCTTGTGTTGTTTTAG
Seq C2 exon
GTCTGCCCAATTCGAGCACACTGTTCTCATCACGTCGAGGGGCGCGCAGATCCTGACCAAACTGCCCTACGAGGCCTGAGGAGCAATACGAAGGTCGCAAGAGACCCGGGGCCCTTTTTCTTAAATTGCTGAAATCCACCTGGAGAACTTTTAGAAGAAATTGGCTAACGACAGGTCCCAGAGTAACCTACCTAGCACCTAGCAGCGCCGGCTAGGGAAAATGCGGTAGGACTTGGGAGCCGTTCTGAACACAAATCTGAAGCCCCGAAGTGGCCCTGTGCATTCGGAGAGACGGATCCTGGCGCGTCTGTTTCCCAACGCGGGAAACGCATCTGGAAAGGAATGGGGACGCCCTCATTTGGAAGACTAATAAGTCTTAGACATGCATACTTTTTTCTTTCCCTAGCCTTGACTCTGCCCGAATAGAAAGCTTTCACCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075:ENSBTAT00000025394:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGTGGTCTCCTTGGACA
R:
CTACCGCATTTTCCCTAGCCG
Band lengths:
257-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]