RnoINT0091647 @ rn6
Intron Retention
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58160235-58162675:+
Coord C1 exon
chr3:58160235-58160313
Coord A exon
chr3:58160314-58160405
Coord C2 exon
chr3:58160406-58162675
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
GTGTGTCCTGTGTGTTTCAGGTC
3' ss Score
12.9
Exon sequences
Seq C1 exon
AGCCAATCATCACTGAAGGTTCCCCGGAATTTAAAGTCCTGGAGGACGCGTGGACCGTGGTCTCACTAGACAACCGAAG
Seq A exon
GTTTGCCCTGTTATCTTTGAATTGCCGGGGAAGGGAAGCCGCAGCAGACTGCAGTGCGCTGACAGCAGCCCTGTGTGTCCTGTGTGTTTCAG
Seq C2 exon
GTCCGCACAGTTCGAGCACACAGTCCTCATCACGCCAAGGGGTGTTGAGATACTCACTAAAGTGCCACAGGAAGCCTGAGATCGGCCAGAAGGCCACCCAGATCCAGCTCCTTTTTTCTTAAAGAGACCTTCGAGGACTGAGGAGCCAACCCCAGGCCACAGAGAAAGAAGCCTGCGGTGTCTAGAAGAAGAAAGTAGTGAGGACAGGCTTTGGGGACACAGGTCCTACAGGACAGACCTTGGGGCTAGAAAAACACACCTCCCTTTCTGGGCAGGTGGTTTGTCCTTTTCCTGTCTATATTCTGCCCAAGAAGTTTAAAAAAACAAAACAAAAACTCTCAAACCTATTGTGTCCAATCTTTACACATAACAGTTACAGAGGGGGAGGGGCAGGTGATTAGTTTTAGAATCTCCAAACCTTAACATGCATGCAGAAAGAAGAAGAAGAAGGAGGAGGAAAAAACAAACAAACAAACAAACATACAAACAAAAAAACAGAACCCTTTAGCTCAAAATCTGTTTTAATCTGGTTCTTCCCCTGCGGATCTTAACATGGCTGAGCTGAGGACACTTCCAGTGGCAAGTACCTACTTCCACCCCAGTTTCCTCTTCACTGAGATTTGCCCCAGAGAGGGTGAGCCGGGAAACATTGCCTATAAATATTTTCTTCTCTGTGGACCATAGATTTGGGCTTTCTGAAGATGTGAGCAGTCCAGAAACCTGAGACTTCACCAGCAACCAGCCATGCTAGATCCCCCTCCCAGCCTGAGACCCCCCCAACACATACTAGATCGTTTGTTGTACTAAAAATTCAAGCTGCAACCCCATTCTTTAGATGTGTTTATCTTGAGTTTAGAGCCTAGCTACTAGCCCTTAAACTGTCCTCCCCTGACTGCTGTCCCAGGACAGGCATTCCTCTGCTCCCTGGGCTATACAAAATCACAGGATCTCTGAGAGAGGAGACACCAGACACATTTGAGATAAGGTCCTAGTTGGCCTCATCTGGAACTCTCGGCTTTAACTATAGATCAATCAACTTGCCTGCAGGGCCTACCTGCTTCAGGAGCAGAAATCCATTCCTGCCCAAAGCACCCTGCTTTTCCTTGTTGATCCTACCTTCAGGGTGGGCTAGGCTGGGCCTCACAGGAAGCCAGTCCTCACAGGAAGTCTAGTCACAGGGCATGACTAGAGAGATCCAGAACCTCAGTGGCTCTGTGAACTCTGGTTTGTGTTCATGCAGATGGCAAAGTGGCCATGTCCTTAATGGAGCATGGGTCGCCTGGAGGGCCAAGGACATTTTACATCTGCCAGGATCAATAGCATCAGAGGCATCCACAGGGAGTCAGCAGGACACCCAGAGCCATGGAGAAGGGAAGGGAAGCTGAGGACAAGTGCTGCAGAAAGTGGTTCCTCCATGGTCCCCAACCCTCCAGGTCAGTTTTTCTACATGTAGAGTGTTGAGTGGAGAGGCAATTCTAAACCTAGTTTATTTGAGGGTGAAAAGGAATGGGGATTTTTAAGATCAATTGGTAAACTTTTGAGGTGTTCTGAAATTCACCAGGCAGAGGCTCAGAGGCTGAAGCTGTGGCCATGGGTGAATATTCATATTCCCAAGAGAGGACCAGGGCCAGCTGTCTTCCCAGACACTTGCCAGAGAATGACTTCACTTCTTCCCTAGAGCAATCAGATTAGCATGTAGCATCTTTATCTTCGGATCAGTCTACTCTCAGGTGCCCCTAAGGATAGTTTTATTAGGACCACAGGATTTTACCAACCACTGGGACAATTATTGCAGGTGGAGGTATTTATGGGGGAAATATATAATCTGATTTAGTAATCTAGCCTGTGCTGGTAAACTCGGCATCTCTGTAGGAAACAAACTTGAATTGAAGGAATGTTGTGTAACATTCTTTGAAGTTAAGATTGGGAAGTCTGGCTTCTTTTTAAAAAGGAGCCTCCTCTTCTTGTCCACTCCCTCATCAGCTGGGCAACTGAACTTATCTGACACCAGGAAGACGGAGTAAGCTGACTATCACCTGAGTGCTGGCTCCTGAGGTGACTCCAGTGAGTTCTGCTCCCAATCAGGAACCTTCAGGACCCATGGGAGAGTATAAGTTCCTTTCTTACTCGGGCTGGCAAGGGTCTAAGCATTTCGGAGCAGGTGTGACACTTGAGAGTTCGGTCATTTGGAGGAATGCACTCCAGGGCTCACAATGTGGAGATAAGATCTCATTTCCTGAAGCTAGTAGAGGCCTGTGCACTCTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587:ENSRNOT00000084797:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCGTGGTCTCACTAGA
R:
TTGGCTCCTCAGTCCTCGAAG
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]