MmuINT0097951 @ mm10
Intron Retention
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71524717-71525191:+
Coord C1 exon
chr2:71524717-71524795
Coord A exon
chr2:71524796-71524882
Coord C2 exon
chr2:71524883-71525191
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
AGCAGCCCCGTGTGTTTCAGGTC
3' ss Score
8.22
Exon sequences
Seq C1 exon
AGCCAATCATCACTGAAGGTTCCCCAGAATTTAAAGTCCTTGAGGACGCATGGACCGTGGTCTCCCTAGACAACCAAAG
Seq A exon
GTGTTTGCCCTGTGATTTTTGAACTGTTGGGGAAAGGGAAGGCCGAGGCACACTGCAGTGTCCCGACAGCAGCCCCGTGTGTTTCAG
Seq C2 exon
GTCTGCGCAGTTCGAGCACACAGTCCTCATCACGCCAAGGGGAGTGGAGATACTGACCAAACTGCCACAAGAAGCCTGAGAATCGGCCAGAAGGCCACCAAGACCCAGAGGACTGAGAAAGCATCCCCAGGCCACACACAAGTCTGCAGTGTCTAGGAGAAAACGCAGAGAGGACGGGCTCTGGGGACTCAGGTCCAACAGGACAGCCCTTGTGGCTAGAAAAACAAACCTCCCTTCCTGGGCAGGTGGTTCGCCCTTTTCCTGTCCATATTCCGCCCAAGTTTAAAAAAAAAAAAAAAAAAAACTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921:ENSMUST00000037210:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACCGTGGTCTCCCTAG
R:
ACACTGCAGACTTGTGTGTGG
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types