HsaINT0102108 @ hg38
Intron Retention
Gene
ENSG00000172878 | METAP1D
Description
methionyl aminopeptidase type 1D, mitochondrial [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr2:172080128-172082430:+
Coord C1 exon
chr2:172080128-172080206
Coord A exon
chr2:172080207-172080327
Coord C2 exon
chr2:172080328-172082430
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
GGCTGGGTGCTGTGTTACAGGTC
3' ss Score
7.67
Exon sequences
Seq C1 exon
AGCCAATCATCACGGAGGGATCCCCTGAATTTAAAGTCCTGGAGGATGCATGGACTGTGGTCTCCCTAGACAATCAAAG
Seq A exon
GTGTTTGCTTTCTGCTCTGTTGCTTTTAAATTGTATGGGAAAGGAAGATTGGTCCGACGGCGCGCTTGTGGCCCGGCCGGAGCTTGCGTGCGCGTTCTGACGGCTGGGTGCTGTGTTACAG
Seq C2 exon
GTCGGCGCAGTTCGAGCACACGGTTCTGATCACGTCGAGGGGCGCGCAGATCCTGACCAAACTACCCCATGAGGCCTGAGGAGCCGCCCGAAGGTCGCGGTGACCTGGTGCCTTTTTAAATAAATTGCTGAAATTTGGCTGGAGAACTTTTAGAAGAAACAGGGAAATGACCGGTGGTGCGGTAACCTGCGTGGCTCCTGATAGCGTTTGGAAGAACGCGGGGGAGACTGAAGAGCAACTGGGAACTCGGATCTGAAGCCCTGCTGGGGTCGCGCGGCTTTGGAAAAACAAATCCTGGCCCTGGACTCGGTTTCCCAGCGCGGTCAACGCATCTGGAGGGGACTGGAGGAAACCCCCTTGTTGGAAGAGATTCCAAGAGAAGCACGGTTTTCTCTTTCCCTTGCCCTGACTGTTGGAGTAAAAAACCTCTTAAATCCATTGTATCAGAGGTCCTTACCTCTCTGACAGTTACAGTGATCTTTGTATCTGAACTTTGCACGTCTGCCGAAAAATCCGAACCTGTTGACTGGGATTTTTAAGAATCCGTTTCTCCCTTTTGTGTATTCCATATTGGCCGGCCCCAAGGATGCTCGCAGAAGCCAGCCCCCAACCCCAGCCCTTCCGTATCTTTCCCCTCCATCGCGGCTTTGCGATGAAAGATTAGCCCGCGAACAGAGGCATTGATTACAAACATGTCCTTGGCAGTGGACTCTGGGCCTGGCCATTCTTCAGGTTTCTGTCAATCCAGAAACGCGACTTTCCTGGACCCCTGCGGCTCTTCCTCCCCCGCCCACATCCAGCCCTCCAAGGCCAGTCCAGAGGTGAAGTTTGAGGCCCTCCCCCCACCCACCCCACACGCACGCACGCACGCTAGACCGTTTGCTGCACTAGGAATTCGAGCTTGGGCCCCACTCGCCCAGGTGTGAACAGTGGCTGATTAGTGGGCGGTCTAGTCTCTAAAATGACCCCTCCCCAGACTGGCCCTTCTCGCATCGGGACCCGCGCTTGCACGCTGCAGGAGCCGCAAACGTCAGCTGTTCTGGAAACCGAGAGGGTCCCAGAGAGAGGAGATACGGGCGCATTTGAGAGCAAGGGCCTACTTGGCCGGGACTGAAGCTTGCGAGTTGAGCTCCAGTTCGGCCGGCAGTTCCATCCCGCTTCAGGAACAGGAATCCAAGGGCCCACGCTCTGTCTGCCAAGGGCCATTCCTGCCCGGAGCACCCTCCTTTCCCTTGCGCTTGCTCTCCGGTACCTGTTCCTCACCTGAGCTCAAGGGCAGGGAGAGGCCGGGCCTCTGGCAGTCCACGAAGGAAGCCGTCTGCCTTCGGTTATGATTTTAGGAACAAGTCCAACGAGGGTGTTCAAGCAGTTAATGGTTGTGCTAACTCTTGTTTCTACTGAAGCGGGTTTTGCAAAGCTGACATCCCTTAAAGATAACTTGGGCTTTCGGAAGCGGCAAGGAAATGGCACCTGTAGTTGCCAGGACAGGTGGTGTCCTCGGCCAGGACTAAGAGCCAGCTCATCTTTGTAACATTCATAATACGGGAAACTGAGGACCAGGTGGCTCGGAAAAGAGATGAGTTCCAGCTTTTACCTAACACAGGGTTCTCTCGTCGTCCCCCAACCCCTCCAGCTCGGCTTCTTTGTGTCCAGGGTTGTAGATTTTTGGATAGAGGTGTTTCTGATTCTAGTGAGTCTGAGAACTGGAAAAGACCAAGGAGGGGTTGATGATTTACAAGGTCCATAGAAAAACTTTTTGTGTGGTCGGAAGTTGGCCAAGCAGAGGCCCACAGCCTGATGCTACTGCCCCCCACCCCCCCAAAGATCTGAATTCCCTAAAGATCAAGAGGGTTCAGCTGGCCTTGGGAGATGTTTGCTGGAGAATGACTTCAGTTTTCTCCTAAGGCAATCAGATTGCAACCATTAGCATTGTATCTTATCTGCAAATCAGTTTACTCCGAGGTTCCCCAAGGATAGTTTTATTAGGACCACAGGACTTTACTAACCACTGAGGTAACACGCTGCTTGTGCAGCAATTATTTTGAGGTGGAGGTATTTATGGGACAAGTTTATAATTCCATTTATTAAAGGGACTAACCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172878:ENST00000315796:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGATGCATGGACTGTG
R:
TATCAGGAGCCACGCAGGTTA
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains