GgaINT0047912 @ galGal3
Intron Retention
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19248302-19248582:-
Coord C1 exon
chr7:19248504-19248582
Coord A exon
chr7:19248381-19248503
Coord C2 exon
chr7:19248302-19248380
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
CCGCTCGCTGTGCGTTGCAGATC
3' ss Score
8.43
Exon sequences
Seq C1 exon
AGCCAATAATAATGGAGGGCTCCCCCGAATTTAAGATTCTGAAGGACAAATGGACCGCAATTTCGGTAGACAATAAAAG
Seq A exon
GTGCCCGATTTTGTTGTTTCCCGATCGGCGGAGCTGAGCGCTGGCAGCCGAAACCCGCAGGTGAGTCCTACGGGCGTGCTGGGGCCGCGCTGCCCCCCGCTAACCGCTCGCTGTGCGTTGCAG
Seq C2 exon
ATCGGCGCAGTTCGAGCACACCGTCGTCATTACCTCGGAGGGAGCAGAAATCCTCTCTAAGGTGCCGGGAGAAGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAATAATAATGGAGGGCTC
R:
GCTTCTCCCGGCACCTTAGAG
Band lengths:
154-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]