GgaINT0047912 @ galGal4
Intron Retention
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17340599-17342438:-
Coord C1 exon
chr7:17342360-17342438
Coord A exon
chr7:17342237-17342359
Coord C2 exon
chr7:17340599-17342236
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
CCGCTCGCTGTGCGTTGCAGATC
3' ss Score
8.43
Exon sequences
Seq C1 exon
AGCCAATAATAATGGAGGGCTCCCCCGAATTTAAGATTCTGAAGGACAAATGGACCGCAATTTCGGTAGACAATAAAAG
Seq A exon
GTGCCCGATTTTGTTGTTTCCCGATCGGCGGAGCTGAGCGCTGGCAGCCGAAACCCGCAGGTGAGTCCTACGGGCGTGCTGGGGCCGCGCTGCCCCCCGCTAACCGCTCGCTGTGCGTTGCAG
Seq C2 exon
ATCGGCGCAGTTCGAGCACACCGTCGTCATTACCTCGGAGGGAGCAGAAATCCTCTCTAAGGTGCCGGGAGAAGCCTAAGGACGCAGCGGGGAGCGGAGGGCTCGGTGCGTTTTGGGCGTCCCCGACCCCGCAGGGACAGCGCTGAGCTCCGGGTGGTTCTGGGGGCACTGGGTGCCGCCCGAGGGGACACAGGACGCGGCCCGGGGCCTCGCTCCGGGCGCGGTGCTCCGCGCGGTGCCCGGTGAGTGTTGAATAAAAGCCTCTTGGTTTGCGGCAGCAGCGGCTCAGCCTCAGCCCGCGGGGGGAAGGGTCCGGCGGTGGGGGAGAGGGGCAGAGTGCCGTGCGGGACACGCGGAGGACGCGGCCGCGCTCCGCGCGTCCCGCACGCGGGGGTCCCCTCGCGGGGAAAGTGCGGCCGCTCTGCCCTCAGCGCCCCTGAACGGGGCCGGAACTTCTGCCGGGACGGAAAGAAAAGTTCGCGGGCGTGGCGGGGAGGGCACGGGCTGCGGCCCCTTCCCCGCGGTTCTCCAGCAGCTCTCCCCTTCCTGCCTCGGCCCGTTTCTCTCTACGCCGCACGAGAAAGGATTAAAAACGAGAGCGCGTTGTTCTGTGGATGGATAACCGCAACTCCGCGCCGCGCACGGTGCGTAACGGGACGCTCCGCGCCGGGGGCGCTCGGCAGAGACGGAGGGCTTCGGCCCTGGGGGAGGTTTGCTCCGCACCCCTCGGAATCGGCCCGACGGAGCGGCCGTGCGGCGGGGGCGTCGCGGGCGGAGCTGCGGGGCCGCTGCTGGGGCAGGCCGGGCCGGGACAGGCCGGGCGGGGCGGCCGCCGGTTCCCGCTCCCTGAACCGTTTGTTTTCACTAGAGTACAGCGGGCTGTCAGCTCTAATTGTTTCTAACAGCATCTTTTTAAGAAGCAGGACCAGCCCCCAGCCTGTTCCCAATGCCACGGGGCAGCCTTTCAGCTCGATCGCCTCTTAGGTTAGTTTGGAAGACCTTAAAACCTGTAAAAATAAACGATGCATCCAACACGTTTCACAGTCGCACCGAGATTCCGCCCCGCGCTCTCTGCCCGGGAAGGCGAGGGCCGCCGTGCCCGCCTCCCCCGGGGCCGCCGCTGCACCGTCCCGTCAGTCCCGTCCCGGTCCGTTCCCACCCCGCCTCCCCCGCAGCGCGGAGCCGCGGCCCCGGCCCGGGCGGTCACTTACATGGCCGGGGGGGTCCGCGTACGGCCGCGCTGCCGCCCCCTGGCTTTGGTCCGCAGCGAGGTGGTGGGAATGAACCGTACGCATCGCATGCAAAACAAAACAAAACGAAAAAAAAAAAAGGAGGGGGGAGGAAGTAAAAGAGGCGTTAGGAAACGGGCAATTAAAACCGACAGAGCGACTAATGGGGAAAAAAAAAAAAAAAAAAAAAAACCGGAGCAGAGATTGGGGCACGTTGGTGTCAGCTGCGCGAAGCCAGCAGAGCCGGGGCTGTTCCACGGGCCCCGCTCCCGCCCGGCCCCGCCGCCGTGCAGCGCGGCTCTCGGCGCGGCCGTGTGTGTGCGCTGGGAACGGAGCGCTCGTCGGGGCCTCCCTCTGCCCGGCCGCGTCTGTGTCTGACCGCGGGGACCCGGGCTCCGCTCACTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(11.4=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAGGACAAATGGACCGC
R:
CGCGTCCTGTGTCCCCTC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]