BtaINT0091680 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12795174-12799300:-
Coord C1 exon
chr10:12799164-12799300
Coord A exon
chr10:12795387-12799163
Coord C2 exon
chr10:12795174-12795386
Length
3777 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CATACTCTGTTGTCCTGCAGGTG
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGAGCAGTGTGTGCCCAGCCCTGCCCACCGGGGACGTTCGGCCAGAACTGCAGCCAGGACTGTCCTTGCCACCATGGAGGGCAGTGTGACCACGTGACTGGGCAGTGCCACTGCACAGCTGGCTACATGGGAGACAG
Seq A exon
GTAAGGATGCTGTTGGCTATCATCCTTACTGGTCATGTTACTCATTTTCACAGCAGCCTTGCAGACAACAGGTCAGGTTTACCAACCTTCTGCCAGCTTTCCTGTTTCTTTCTCAGAAAGCATTCTGAGTCCTCCTGCCAATCCATCCTTCCTGGCCCTCAGCCTGCTGAGGGCACCCACCTTCCCCCAGCCCAGTGACCCAAGCCTGGAATTTGCATTGACTCACCTGGGGAAAGAGGTGGGCACCTACTACCACCCTCTACTTGCTACCCTCCTGGAGGGAGGCAGCAGCACCGATAATCAAAGAAGTTGAGTGTGCACTCTCAGTTCACACATTTTGCACTATTCTTTTTAGAAGTAGATTTTTATTCCTGATATGAGTTCTGTCAAAAGGATACTGACATCAGTTTGCATCCTCTGAAGGCCTGTGGCCTAAGAGCAGACTGAACAAGGGCGCCAATGTTCTGGAATCAAACTAACCTTGCCAAGTGGATAACCCGTAAAATACATAATGGGAGGGTTACCGGAGTTGTGTGTTTCCCATGGCAAGAGGGATTTCATGATGATAGGGAAGGTGCTCTGGGAGAAGGAGAAATGACAGCCAGGGTGTCTGATGGTGAGTGAATTCAGATTTGGTGGAGGACATTTGTCCACAGAATCCAGGTGAATCTCCTCCCTCTCAGTCTGAACTACATCTGTCTCTTTGAGCAGAGAGATGGGCAGTAGAAAGGAAACTCTCACACCCCTTGTCTGCTTCTGTGGGATCCATGTTTCACCTGGATTTTGTTACTCTGCCTCCCCTGCCCAGGTAACATCAGGAAGCAGGAGTCAGGGCTGAATTAACCAATGAGTCCTTCTGGCTCTGACCAACATAGTGGGGTTCCTCCAACTCTCATTGGAGTCAGCCCCAAATCCTAGTGATACCCAGAAAAGAGATTTTCCATTTTCATCCTGAAGCTTGTTTACCCTAGCCTGGAGCCTTTTAAGCCAGATCTGAGCTCTTGGTGAGCTAGTGTTCATCTCGTGAGCATCCCTGGCGTAGAATGTGGGGTGTGGCATCAGGGGACTCATCCCTCTCTGACCTCTGCTGGAGTCTTCGTCTCTGAGGGAAGAAAGGGAGGCAGGACTGATGTGCTGCATCCACCTCCCTATCCCCTCTGTCTCTCCCAGTGAGAAAATGTGCAGGTTGAGCCACAGGGGCAGGAACTGGAAGACCCTGGAACCAAAACAGGACCCCTTGCCACTTGCACATGATGGCCAACAAAACCCATTCACCATTGGAGACAAGCAGGTTGATAGCTCCAGCCGGCTAGATTCCACACCAGGAGACCCAACCTCATCGGCGCTCTCCATTTCCACCACCAAGATGTACCAAATGGAGAAATAACCCTAATCCCTCTGGTTGGGACCCAGCCTATGAACCTGAGACAGAGCAAAGCCCCTCAGACCTTAATGTCCTCTGGCAAGCTTTTGCCCATCAACTCCCGAAGAATTAAAAAAGAGGGCCCAGTAGCATTTGGGTTTCCCACCTAAACGGGCTGCCTGGTGTTTAATATTTTGTAAAATTGCCTCCATTTATTTTGTAAGTGACAGCTGCATGAACCCACCCCACATCGTTGCAAGCATATTAAAGTTGAGTGGGTATAATAACGCAGGCCTCCCCGGATAGGCAGAATCCAGTGCAAATTAAACATGAAACGTAACGAGGGTTTTGCAGCTCATTTTGTAATTTAATTGAGCAATGTATCTGGTTGTTAATGGTAATATCGGACACATTAGATTGATATGTTGCAAAGGAAGGATGTTTAAGTAGAAAACTAATTCCTGATGTGATTACCCTTCTGTTCCACAGGCCCCGTTATTAGTGTGCTTTGTGTAAAATTCATTAGCAGTTGTTGCTTGATCTCTAAATAAATAAGTTGTTTAAATTGTGGGTAGGAAAAAAAAGGCTGATTATGTAAATGGATTAGGTTGTCAATATTTCATTTCCAGATTCTTTTTCTGGGGCTACGGAGTGTCACTTTGTAAATATGACATGGGGTGGAGACATGCCCTTCAGAGAAGGGAGCTCACACTCCAGGACTCTCTCTGCTCAATCCTGCCAGAGGGGAGGGAGCAGGAGGTGTCTCCAGGCTGGGGTCTCTTCCCTGATGGCCTGAGACATCCAGGAGAGGCAACCTGAGTGACTCCCGGGGAAACCTACTGTGAGGCAGCACGGGCTGGCAGTGTCCAATTCTTACCTGCACTGTGTCCTCTGCGCCTGCCTCGGTTTCCATCCTCACCCCTTCCACCGTATTCCCCTCTTCCTTCCTCTCTTCTACCTCCCGTGTCTTCTCCACGCATCCCCTTCTCTCTTCCCTCTTCCGCTGTTCTTTCCCTCCCTGAGGCTTCAGATGGGCTAAAATGCAGCAAGACTTGCAGGAAGACAATCTGGGTGCTGTGATGAAGAACACTGCTTCCAACTCAGGACTCACCAAGATTTAATAAAGAGGCTAAGGCTGTATTTTTTTTCCCCAACATCTTTTATGGCTCCCCTCTGCCCTGATTATTGTAGAAGATAAATAGAAAACCTGAAAATGGAAAAACATACTCATTAAAGCATTTGTAATTCCGTAAGTCCACTCCATTGTTAACATTTTGGAACTCTTCCCTTTGAGGCTTTTCATGCCAAAAGGGCTCTGTTAGGAGAACTACAGAAAACAGTATTAACAAGAGTAATAATAAGAACTAACACCGCTTATTGAGCGCTTACCATTCATGGGGCACCTTTCTAAATGTTTATACGCGTTATCTCATTTAATCCTCAAACACATGGTGAGGTTTAATTATTACCATCCCGTTCTGTGATGAGGAAGCAGATGTCAGGGCAGTAAGGCCAGTTCCCCATTCTCCACACCTTTGAAGCAGCATGGGGACACAGACAATCCAAAGTCCATAGGCCATTTCTGTTCATTTGTCTCTAGGATGCAGGGGTGGCCCATCTCTTTTTCCTCAAATGCCCCCAGGTTTACCGCTTAATTTGTTGCTGTGACAATGAATCTATGTCCGTGCATGCTCATTACTAAGTCATGTCTGACTCTGCGATCCCGTGGACTGTAGCCTGCCAGGCTCCTCTGGCCATGGGACTTTATGTAGTTTGTTATTTAATGGGTACAGAAATTTCAGTTTGGGAAGATGAAACGGTTCTAGAGATAGATGGTGGTGATGGTTGCACAGCAATGTGTGTTCTATGTACATGCTCGCTCAGTCGTGTCCAGCTCTTTGTGAGCACATGGACGTAGCCCCCCGGGCTCCTCTGTCCATGGGATTTCCAGGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAAGGGATCTTCCCCACCCAGGGATAGAACCTGCGTCTCTTACATCTTCTACTTTGGCAGGCATAGTCTTTATCACTGAGCCACCTGGGAAACCCACACAATATACATGTACTTAATACCACTGTATACTTAAAAATAATTAAAATGGCAAATTTATGTTATCCTTATTTACTGCAGTCAAAAAAAAAATACACAAAGCCTACAATCAGTGAGATATGATAGTATGAACTCACTCCTGGGGACTGAGGGGAACTGGCCTGGAGAGGGGAACGGCCTAGGATGGTGAAAGCACAGAACCCTTCCTGCAGGAGGCAAGGGAGGACGGGAGGAGGCCATGAGGAAGGGCAGCCAGCCAGGCCCAGGCCCAGAGGATCTGGAAAGGCACGTAAGGGGGCATGGACTCACCACATACTCTGTTGTCCTGCAG
Seq C2 exon
GTGCCAGGAGGAATGCCCCTTGGGGACCTTCGGCTTCCAATGCTCCCAGCGCTGTGACTGCCACAATGGAGGTCAGTGTTCACCCACGTCCGGCGCCTGCGAGTGTGAACCTGGCTACAAAGGCCCCCGCTGCCAGGAGCGGCTGTGCCCTGAGGGCCTGCACGGCCCAGGCTGCAGCTTGCCCTGCCCCTGCGATGCTGACAACACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.5),PF0005319=Laminin_EGF=PU(54.3=54.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF126612=hEGF=WD(100=18.1),PF0005319=Laminin_EGF=PU(18.8=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development