BtaINT0095838 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50510897-50514869:-
Coord C1 exon
chr3:50514788-50514869
Coord A exon
chr3:50510993-50514787
Coord C2 exon
chr3:50510897-50510992
Length
3795 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
GTATATTTTAAATATTTCAGGAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
ATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTCTAAATCCTGGGTTCTCTGGAAGGACATTCAAACAG
Seq A exon
GCAGGTGCTACTATTTCCCCTGGACATGATTTACACTAAAATTTTATTTTCTTCAGCTTGTCATTTTCTAGTGTTAGTCTCTTTAGTACAGTGTATTAAGATAACTTAAAAAAAAAAATCAGGGCGGTATTCAGTCTTCAAGGAGTTATCTGTGTTATAGATGATAAGAAGATCAAGAATTGCTCTGTTGATAAGAGTAGATTAGAGGACGGATGCACATGTATAAATTACTGGTAGGGCCCTTCTAAGAACTTTGACGAAAAATTTTAGCCATTAATATGAGTAATACTTTGGGCTTCACCTTAACTGTTACTTGCCTGTATTAGTAAGAAGTTATATAGAGAGGTAGTATTTATTGAGAGCATACTATTTGCCAGATGTTTTGGGGGATTAGGATATATTAAATAGCTTTAGAATACTAGAAATACTTATCCTTAAGAATAGTTTAAAATTACTGCTTAGCTATGAGTTTTTATATTTAGATAACAAAACTAGGTTATATTTGGATACAAGTAGAAATGAATACAGGTATGCTTTGGTTTGGTTATAAGTATGTTTCTTGTAATGCTTTTTATTGCAAACTATAATTGTTGTATGCCCTTTAAATCTGTTCAATAAAGGCATTTTCCCAGGTATCTGTTTCATGAAAGTGCTATATTTATGAAAAATTATGAATATTAAAAGTGCAAGTACTTTGCAAACTAAAGCCCCAGTTTGGGTATCCTTGTAATTTGTTAATGGGTCTGCACTTAAGATATTTTTATATCTCCTTATTAGAAAGGAGACAAATTCTTTCAAGTATTTATCAACTGGGTTTTTAATTTGAATCTGAGGTGCGACTTTATGGTAGGTTACTGCTGTGTTCATATTCTTGATTTCACTCTTAATTTTTTTTAGAGAATAAAAAGTTTTGATAATGGAATTGGAATGTTCTAGTTGCCATTTTTATACATGGTACTTAGGAATTAGATGGAGAGTTCAATAGCTGTTAACTTTAGTAAAATGTTTTTCTAGAGAAATTTTTTTCCAGTTTTAGGACTGATCAATTTAAAGGACTAAATGATGTTTTGAATCTCAACTTGAGGAGTCAGTGAGAAAAGGAATAGGAGGAGCACAGAATGTCTCCAATAGTAGTGATACTGAATACCTCTTATTAGCCTGCATACAGAATTATCCCCCTTTTCTTAGTTTGTAAATATGGATCCTTCTGGTGGAACTGAAACATGTAATACTGATTCTGTTCCCCTTCTATTAGTATGTGTCCCTTTCAACTTTTCCACCTTTTTGACGTTCTTGTGAGTTAAATATAAAGGTCTTTCTCTTTTTTCCTTCTCTCTCATCCTTCCTTCCATAAAGGAAGAAGAAAACCAGCTGTACATAGAGGTAGAAAGATGTCGTGAAAGTGAGGGGGTTGTGTTCTGCATGTGGCATACTCAGTATGTCAGTTCAGTGGCCTGTGATTGTTTTTTCCTTGCTGGCTCCTTTTACTATTCTTAGATAGCTCTTGGGCCATTTAATTCTTTCTGACACCTAGAAAGTTGCACACATATAACTTGGAATTGCTATAGAATGAGTAAGTGAACCTGGAAATTGCATTATGGCAGATGTCAGTGTGGAGTGTAGCTTTAATAGTTTTCTTCCTGTAAGAATCCTGTATATAGTAGTTATACATCAAAATGACTTAATAAATTATAGTAGTTTAACTCATCTAATAAGATTCTTTTAGAAAGTTTACATAAATAAAAGCAATGTATGGTCATATTAGTAATCAAAGAATTGTGCATTGCAACAGATACCATGTTAAAACCATTAAATAATTTTTAAAGGATTTTGATCTTAATAACTGTTATGGTTTCTGTGAATGGTACACTGCTGGTAGCAATATTACATTTCTCTCTTGGATATTTGCAATAAATGCATTTAAATGCATAAAAATGTTTTCCATGCTTTCATCTATACAATAGATTCATTTGTAGCAGTTTACTCAAAAGAAATAATTCAGAAGTAAAAAATCCAGATGAAAAATGTTTCCTGTAGCTTTAACAACAACAAAAAATTGGGCACATCTAAGATGAAATGGCTTTATAGTCATTTGGGCTTAGAGTAAGGGAGACTAAGAAGGCTAATAAGCTATACAGAAAGTTTTTGTAAACCTGATGGTAAAAGAGACATACTGGATATCACAACTAAAGGCAGTTCTCTGCTTCCTCAAGATAGTTTTCTTGAGGTGAACACGTAGGTCTTTTGGATCAGCACCCTCTTTTCTGAGGAACTGCCTTCCCCCACACCAGTCTACATGGTTATAATGAGAGAACAGGCACCTACTGCAATCTGGGCCTATTGCTCCTTTTCCAGGAAGTTGCAGATTTGGACTGAGAGGTTCTAGGTGCAGTCTGGTTGCTCTCCTGACTGGAGCTATAAACTGAGAAACTGTGGGAAGCCACATCCAGCTATGTGAACAGAGCCTGAGAGGAGAGGAGAGAGGACAAGAGCCAAAACAAAAATGGAAAAATGGAAAAAACAAGCAAAAAATTTGGTAACCTGCATATCTAAGAATAGTCATAAAAAAGTAAATTTGGTTATTTCTACTGGAAAGAATAGCGTACAACTATTAGAAGTTAGACTTTTGAGAGTCTTCCCTGGTGGTCCAATGGTTAAAAGTCCATACTTGCAACACAAGGATCCTGGGTTCAATCCACTAGAACCCACAACTAAGATCCCGCAGCCAAATTAAAACAAAAAAGTTACACTCTTTGAAACCTACAGTGTGAAAAATTCTTTTGATGGAAGAAACATTATATATAGTATTAATGAAAAGAAACAGCTCACAATGGAGAAAATATGGTGTATCTGGGTTAAATTCTACCCTTGATACGTGATTAAGGGTCCTTGAACTATAGTTCCTTTATCTTTCTGAGTCTTAGTTCTTCTCTATAAATAGGATATTTATCTAATAAATTGTAGAATTAAATAAAATAATATTGTCAAGAGCCTAACACAGTGCTGGCTCATAGCACAAAATTATACATTTTTATTATTGCTGGTATGTGAATAAAGTATATGTGTATTAGTATTTTATGTATATTTAAATTGAGATTATTATAATTGTGTTAAAAGTGATGAAATTCTAAATTTTGTGGAATAAAATTGTTTTCAGAATATAAATGTTTAAGGAAGAAATAACTTATTCAGGTTAAAAATTAATGGTGGAACCCCTCATTTTTGTTGCAGTGTGGTATTGTTTAGGGTACACTGACACCATGTTTCCATATTTCAGAGCTGTAGATCTGATAGTGTTCAGCCTTTCCTTTTTGTAAATTAGTGAATAAAAATAAATGTTCTGAAACTTGAGAGTAACGAGTCATTGATGGATCTTCCTTGCCCCTTTTCTTTAGTCTCATGATGTTAGGCAGTGTAGGGTGAGTGAGTACATGTACATGGGTAGGTGTGTGTTCTGGAGAGTTGTTCTAGTGTTCAAAAACATTGGCTTTTCCCGCCTCCCAGGATGGTGGAAACACTGGAAGTGAATGGTAAGGGATCCTGCCTGAAAGCATTTTAAATTATGCCCTTTGCCAAAAGGCAGATTAAATTGTGAAGGCAGACAGTAAGGTGTCTTCAGTTAAAGGTGAGAACAGAGGTAGGGATCAGAGAGAGAGTGTTTTGTGTATAGTACTTTGCCTTGAGAAAATGCCATTATGATCTAGGAAACATGTTGCCAGCATGGGCTGCTCTCTCAGTCAAAAAAGTAGTTTTGTTGTATGGTACAATTCTTTATGTATATTTTAAATATTTCAG
Seq C2 exon
GAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0013017=C1_1=PU(61.0=96.2),PF144461=Prok-RING_1=PU(53.2=96.2),PF0062824=PHD=PU(44.4=92.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]