RnoINT0095103 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2680590-2685100:-
Coord C1 exon
chr14:2685019-2685100
Coord A exon
chr14:2680686-2685018
Coord C2 exon
chr14:2680590-2680685
Length
4333 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
TGTTACTTTATATATTTCAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
ATAAACATTTTGAAACAGAGCTGCTTCATCACATTTGAGGACAGTTCTAAGTCCTGGGTTCTCTGGAAGGACATCCAAACAG
Seq A exon
GCAGGTGCTATGTTTTTCATGACCATGATTTGCACTGAAATTTGGTTTTCTTCAGCTTGGCTTTTTCTGGTACTAGTGATATTGAATACACTTTTTTCAATGACTGGGTAGCATGTATAAGGAGAAGTTTAAAAATTTATTGGGTATACACAATTATTTTCCCTTGTTTTATAAACAAAGATCTCTACAGTTTAGTTGAGTCATTTAATACTGTTTCCTGTTATTCTTCTACATGCTGAATCAACTTCAGCTTTTCTACCTTTTGGGGATTTTGGTAGGTGTGATATAGGTCTTTCTGCCGCCGCCCTCCCCCGCCCACTCCCGCTCACCCCCTCCCAAGACAGTTTCTCTGTGTGACCCTGGCTGGCCTTGAACTCACAGGTCTGCCTGCTGCCTCCCAAGTAATTAAAGGCATATACCACTATACCACTGCTTACCTACCTCTTTCTGCACTTTAAATCTTTTTTCATTCTCTTTTTTTTCTCTTTATCCATTCTTTTATTTATTTAGATTTTTTTTATATCTATTTTTTTTGTACCACGTGCAAGCCTGGTGATTCTGGAGGTCAAAAGAGGTGTCTTTTGACCTGGACTTGAGTTCCAGATGGTTGTACATCATGGTGTGGGTGCTGAGCACTGAATATGGGGTCTCTACAAGAATAAGCTGAGCCATTTTCCCAGCCCCTTTATTTCATTTAAAGTGGTAGAAAAGGGAAGTGTAATTCCAGGGGATCAGACACCCTTGCAAAGATGCAGGCAAAATACCAATGCTTATAAAATAAAAACAGATTATATATTAAAAAGAAACGTATGTTATAATGGGGGCATATATACTATGTTAAGCAGAAATTTAGAAACGTTGTAAATACCTGTTTCTGTGAGAGGACATATTCCCTGCACTGCTGTTGGCAGTGTAGGTCTCCGTTTTGGCTATTCTTTCAGCAGTTGCATTAGATGAGTAAAAATATACTCTTATTTAACAAACCACTTTCTAGATGCTTATTAATAAAATGTCATTGAAAAGAAAGAGGCTAGGTGGAAATGTTTATTATAACTATTTTTTAATTAAATTCGAATTTAAAAATAGGAAAAAAATGTGTATGTGAAGAGGCCAGATGTGTCCCATGAAGTAGAGGTGGTGTGAGCACAGGCAGTTGTGAGCCGCAGCTGTGGGTGCAGGAAACTGGTCTCTGGTAAGGGCCATATCTGCTTTAGCCTCTGAGCTGTAGGCGTTGACAGTCGTTTGCTTCACCACATGGTTTCTCTTCAGCCTTGGCTCACCTGGATCAGGCCGGCCTGGACTAAAAGGTGTGCAGCGGCCACACTGCTTCCCAGCTTTGCTTGGCTTTTGGTTTTTGAGAGACAGAACTCTGCAGCCCTGGCCGCCTGGATGTAGTGTGTAGAGCAGACTGGCTGGGAACTCAGAGATCTGCTTGCTTTTCAAGTTCCCGGCCATCTTATTTTATTTTTTGAGATAGGGTATTGTATCCTTGACTGGCTTGGAACTTGCTATGTTAAACAGGTTGATTTTGAACTAAACAGGAAGTCGGGTTGGCTCTGCCTCTCAGGAGCTAGGATTAAAGCTGTTTGCCACCATGCTCACTGTATTTGAAGTAAATGTTCGATAGGTACTTTTAAGATTTATTATTTATTCGTGGGGGGGTTGGAGTATTTGTGGAGGTCAAAAGAATGTGTTGGATTTCATCCTCCGTCACTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCTCTGTCACTTTTTATCATTCACTTGAGGCAAGGTCTCTTCCCTGAACCTGAGGCTAGTGTGACACCTGTGCTAGAAGCCAGCCAGCCACAGTGATCTTCCTGTCTGCACACTCCACCCCTGTCTGAGTTGGGTGTTTGTTTGTTTGTTTGTTTGTTTTGAGCTGAGGACCGAACCCAGGGCCTTGCGATTACTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTGAGTTGGGTTTTTAAATATTTGAGGGAATCTATGATTGCTGGGATCCGAACTCTTGACATTTGTGGTTAGGGAGCGGAGCAAGTTCTTAACCATTGAACCAGCTTTCCTGCCTAGCATTTGGTATTAAAATGAAAAAGCTGGGACTGGAGAGATGGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTGGCTCACAACATCTGTAATGGGATCTGATGACCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACAGTATAATAAATAAATCTTTAAAAAGAAAAAGATGAAAAAACTAATAAGACTTTGTAGATAGCTTAATTTGTATAAGGAAGACCATGGTAAGTAAGCGAGGTTAGGAATCTTGTAAATTTGATAGTAAAAATGGTATACTTGGATTTAACAAAAGAGATAATTTTCAGGTTTCTTAGGCTTGTTTCTTGAGATGAGAACATTTGGATTAATACCTTCCATTTATGCAGAATTGCCTTCTTCCTTACCAGTCCACACAGAAATGGTGGGGGTCATATTAGGCATCTGCTCCTCATGGAGGCTACGCAACCCTTTCTTTTGAAACAACACGTTTAACATGAGAAGGCTCAACTCAGATTGAGTATTCTAACTGTAGCCATAAGCACAGAAGCTATGGGACAAGTTACAGTAAAGCTACCAGGAAACAAAATTTGGAAGGGACAGAGGGAAGACCTAAGTAGACAAATAATAATAGAAAAAGCAGTAAAAAAATAATTGGTAACTTCTATATTACCTGTATGTTACAGAATAAAGAGGTAATAGAGTAAATTTGTTTTCTTCTACTGGGTGGAATATTATGCAGCTATTAGAAGTTAAAATTTTGAAAACTGGCTGTGTGAAAATGCTTTAGTAGAAGAAGTATTTCCTTGTATTGGTGAGAAGAAGCAATGTATGGTGGGTTTGACATCTAATGCTGATACTTTCTCACAGAGGGTATAGGTCAGTTCCTTCATCTGCTTGACTACCACTCCATTATGGATAGTATATTAACAGAGTCTATTGGTTGTGGAGGCTGCTGTGACTCAGGTCTGTGTCCTAGCACCTGATTACAAGTTTGTGCTACAACATTCAGCCTTGAAGTGTCCCCTCTCACTCCCCCACTCTGTGTAGCACTAACTGTCCTTGAACTCACTCTGTAGTCTATTCTGACCTCAAACTCAGAGATTCCCCTGCTTCTGACTTCTGAGTGCTAGGATTATAGGTGTGTGCAACCACACCTGTTGAAGTTTTTATTTTAGAACAAAAATGTTAAGGAAACAGCAATTTCTTACTTGTAATACATATAAATAATTGGTACTTCCAACTTTTGTTGCAGTAGAATTCTTTGTGAACATTATTAGACACTATTTTTCTAGATTTAAGCCATGAAATAACTGCTGTCTTTCATGATTAGTAAATAACAAAGAACTGTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCCCTACCACTGAGCTAAATCCCCAGCCCCCAAGAACTGTTTTTAAGTCCAGAAAGGGAGCACACACACAACGTCCTCCTTGACTAGTCTCTACAGTCTCATGATACTGATGTTAAAAATGAGTTCTATAGAGAAGTCTTAGTGTTAATAAATCTCTCCCAGTGTGTTAGTTTGAGTTTTATTGCTTCAGAGAGACACCATGACCAGGGCAACTCTTATTTTTAAAAAGAGCATCTAGTTGGGGCTTACTTACAGTTGACAGGTTTACTTAGTTGTCATTCATGGCGGCACACAGGCAGACATGGTACTGGAGGGCAGCCAAGAGCTCTATATCTGATCTGCAGGCAGCAGGAGAGTGACACTGGGTCTGGCTTGAGCTTCTGAAACCTCAGAGCCTACCCCTCATTGACATATTTCTTCCAACAAGGCCACACCTTCATTAATGAATTTAATTCATTCAAACCACCACACTAGGCCTCCATCCCCATTTATACTATATTTGAAATGAGAACAGTCATGTCTTATGCCTAAAAGCAGGTTGAAGCAGGTAGGCAGACATGTTAAGTTAGAAAGGGAGGAGCAGAGCTGGAGAACTGAGCAGAGAATATTGGGTGTACTTGCTGCTTTGTTGAACATCCTGACATAGTTAACAAACATTGCCCATATGGCTACACTAAGTTATAAAGGTTCTGTGGAATTCCTCATGACTGTTTAATGTTACTTTATATATTTCAG
Seq C2 exon
GAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCACCTAATGAAATGGTTATCTGTGATAAGTGCGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(44.3=100),PF0013017=C1_1=PU(6.0=10.7)
A:
NA
C2:
PF150571=DUF4537=PD(22.6=42.4),PF0013017=C1_1=FE(61.5=100),PF144461=Prok-RING_1=PU(57.1=84.8),PF0062824=PHD=PU(44.4=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]