HsaINT0105974 @ hg38
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29535]
Coordinates
chr1:93110545-93114783:+
Coord C1 exon
chr1:93110545-93110626
Coord A exon
chr1:93110627-93114687
Coord C2 exon
chr1:93114688-93114783
Length
4061 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
ATGTGTTTTAAATATTTTAGGAG
3' ss Score
8.6
Exon sequences
Seq C1 exon
ATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTCTAAATCCTGGGTTCTCTGGAAGGACATTCAAACAG
Seq A exon
GCAGGTGCTACTATTTCTCTTGAACATGATTTAAATTAAAATTTGATTTTCTTCAACTTGTCATATTATGATGTTGTCTGTTGAATACAGTGTATTTAGATAACTCAGTATTACTTCCTAGGAGAGGTTAAAAAATCAGCATAGTCGTTATTATAGACCATAAGAAGAACAAGAATACTCTAGAGGACAGATGCATCACTAATTTATACCTGTAAGCTATGTTAAGACCCTTCTAAGAACTTTGAAGAAAAATCTTTAGTAACTAATCTCAGTAACGGTTTGGGATTCAATTCAACTGTTGCTTGCTTATATTTGTAGAAAGCAAGTGTTTATTGGGAGCATACTGTTTGTCAGATGATTTGGGAAATTAGGACATATAAAACTGATTTAGAATAATAGAAATATTCGTTAATAAGAATGGTTTAAAATTACCATTTAGTTATGGGTTTTTTATGTTTAAATGGGAAAATGAGGCTATATTTGTGTGCCAATAAAAATGAATGAAAGTATGCCTTGGTTTGGTTATAGGTATGCTTCTTGTGATGATTTCTATTATTAGAAACCATGATTGTTTCATGCTTTTAGCATCTGCTAAATATAGATGTTTTACCAGGTACCTCTTTCATGCAAAGTACTTTTAAAAATTACAATCTCTACTAAAAGCCTGAGTATTTTAGCTGTTCATTAAAGCCCTACTTTTGGTTTTCCTTTTGCTGGGTTAATAGGCCTACACTAAGACCCGTGTTTTGTGTATTCTCATAGAAAAGAGATAAATTTTCTCCCTAAAGGGTAGACACCTTGCCAAAGTATTTAACAATTGGGTTTTATATTTGAATACCAAGTTCAATTTTATGGTAGGTTTCTGCCATGTTTTAGTTCTTGACTTTACTCTTAATGTTTCTTAAAGAATAAAAAAAGTTTTGGTAAAGGAATTGGAATGTTCTAATTACCATCTGTATAGTTGGTACTCAGGGCTTAGGTGGGGAACTAAGTAGCTTTTACTCTGGTAAAATGTTTTTCTGGAGAAACTTTTTATGGTTCCTGGACTGATAAGTTTAAAGGACTAAAATTACATTTTGAATCTGAAATTGAGGAGCCAGAGAAAAGTGTGACTCATAAGATTTAAAGGGATAGGAGATCTCCAACACTACTAATATTGAGCAGATCTTACTACCCTGCACACAAAATTATTCTTTTTTCCTTATTTTGTAAACATAGGTCTCTCTGTAATAGCAGTGAAACATGTTATGCTGCTTTTTACTCCCCTTCCATTAGCTATGTGTTTCTTTCAGCTTTTGAAGATCTTTTGGAGTTTCCTGTGGATTTAATGTAATAGGTCTGTCTGTCCTTTTGTCTACTTCCTCCTTTCTACTTCTCCTCTGCTTTTAAAAGTGGTAGAAAAGAAGAAAACCAATGTTACATAGAGATAGAAAGTTGTTGTGTGAGGGGTTCTATAAGTCCTGCACTCAGTATGTCAGTTTAATGTTCTGTGGTTGTTCTTTCTTCACTGGTTCCTTTTGCTGTTCTTGGAATTACAAAGGATTGCTCCTGGTCATTTAACTCTTCTTAGCACCCTGATATTAGCACATATGAAACTTATAGTTGCTATAAAAATGAATAAATGAATCTGAAACCTGCGTTATGGCATATTTCAGTGAGGAGTGGGTTTAGTAGTTTTCTTCCCTGTAAGAAATCTGCCAATAATGTATATCAAAACTTAATAAATTATATTTGTCTAATGAGTTTCTTTTAAAAATTTTACATAAAGAAAAATATTAGTAGTCAACAGGGTGAAATATATCATGTTACAACTATTACATAAATGTAAGAGGGTTTTGAATCTTAGCATCTAATGCTGTTTTGGTTTCTGTGAAATGATATACTCTTGCATTGCTGGTGGCAGTGTAAATTTCTATTTTGGTGGTTTAGCATTTGCATTAAATGCAGAAGTTTATAATTATCTAATAGACTCCTTTCTAGCAGTTTATTCATAAGAAGTAATTCAAAAAATACTAGGTGAAAAATGTTTCCTGAAGTTTATTTTAACAACAACAAAAAATTTGGTATTTCTAAGATGAAATGGCCAAGGCTTTCTAGTCAATTGGATTTAGAGTAAAGGAGACTATAGAAGATTACTAAGCTATATAGGAAGGTTCTTGTAAACTTGATGGTAAAAAATATATACATATATGTTTGATTTCACAAGTAAAAGTTAATTCCCAGCTTTCTCAGGATTGTTTCTTGGGTCACTACCCCCTTTTCTGAGGAATTGCCTTCCCCATCATTAGTCCAGGTAGTTACAGTGAGAGTCAGGTCAGGCACCTCCCCTCGCGGGGCTGTTGTTCCATTTCCAGGGAATTGTAAATTTTCACAGAGAGTTCCCAGGCTTAATCTGGTTGCTCTCATGATCGGAACCATAAACCCAGAAGCTATGGGAGACCACCTTCAACGAAGTGTACCAAGAAGCAAACAGCTGGGCGCAGTGCCTTATGTCTGCAATCCCAGTGCTTTGGGAGGCCCAGGCAGGAGGATTGCTTGAGCCCAGGAATTTGAGACCAGCTTGGGCAACACAGGGAGATCCTGTCGCTACAAAAAAAAAAAAAAAAATAGGCATGGTGACACACACGCCTGTGGTTCCAGTTACTTGGGAGGCTGAGGTGGGAGCATTGCTTGGGCTTGGGAAGTCAAGGCTGCAGTGAGCTGTGGCTGTGCCACTGCACTCCAGCCTGGATGACACAGCAAGACCCTATCTGAGGGGAAAAATAAAAGGAAGCAAACAAAGCAGAAGAGAGAGGATGAGAGACCAGAACAAACAAATAAATAGCAGAAATACAAAAGACAGATTTCTCCCCCTCCAAAAAAAGAAAAACAGTTGGTAACCTGTATGTCCGAGAGTAGAGTAATAATGAAGTAAATTGGGTTATTTCCACTAGATGTAATACTATGCAGCTATTAGAAGTTACAATTTTGAAATGAAAAATGATTTTCATTTTCAATTTTGAGTGAAAAATGCTTTTGATAGAAGAAATATTACATAGTATTGATGAAGCATCTCGTAGTGGAGAGAACATGGATTTTGGCACATCTGGATTTGAATCCTAGTCTTGATGTTTTCTCAGGGTCTTTGGGTTAGTTACTTTGTCTGAGCCTCAGTTCTTCTCTATAAATAGTATATTTATAAGTTAGTTGTAGAATTAAACAAAATATATCAAGATCCTACACAGTGCTTGGCCCATAGCACAAAATTATAAGTTTTTATTGTTGTTATGTATATAAAGGCTGTGTATTGTGAATTTGACTCTGCTGAAACAGACAAGATGAGAATACTGGAAATGATAATGTGTTAGGGTGGTAAATTGTATTAGAAATTTTGTGTGATTTTTTTTTTTTGAGAATAAAAATGTCTCAGGAAGAAATGCTTCACTTGTTCTGCTAAAAAAAATTAATAATTTTGGGACCCCCAAATTTTGTTGAAATGATATTTTGTTAGGGTACATTATTGGATACCATATTTTCAGATTTCAGAAGCTAGAGATTAAATAATTGGTGTTCAACCTGTTTAATAAATTAGTAAGTAAAAGGAAATGCTCTGAATTGAGCGAGAAAGAGGTAGTTTACTTATCTTCCTTACTTTTTTTCTTTAATTTCATGGTATTAGTGGTGTAGGATAAGTGAATGTATGTACATGAATAGATAAGTATTCTATAAAGTAGCTCTAGTGTTCACAAACCTTCTCTATCTGCTGTCGCCCATCCCTCATCTCCACCTTCACCTTTAAGAGTGGGAATATGAGAAATGAGTAATAAGGGAAGATGCTCAAGAGCAATTTAAATTATGCCTTCTGCCAAAAAGCAGATTAAATTATGAAAGTAGGCATGTTAAGTTAAAGGTAGAAAGAACACAGAGAGCAGAGAGATACCATTCGTGTACTTTGTCTTGTGAAGCATTATGATGTACTTAGCAAACATTGCGCATATGTGCTGCTCACTGAGTCATAAAAGTGGTTTTGTTTTATGGAATTTTTTATGACTCTCTTTTTTAATGTGTTTTAAATATTTTAG
Seq C2 exon
GAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033:ENST00000370298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(45.0=100)
A:
NA
C2:
PF144461=Prok-RING_1=PU(53.2=96.2),PF0062824=PHD=PU(44.4=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development