DreINT0098429 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10840022-10843450:-
Coord C1 exon
chr2:10843369-10843450
Coord A exon
chr2:10840115-10843368
Coord C2 exon
chr2:10840022-10840114
Length
3254 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGTCTTTTTTTCTCTCTAGGGG
3' ss Score
13.13
Exon sequences
Seq C1 exon
ATAGATAAACATAAGCATCGCTGCTTTGTGATCTTTGAAGATCAGTCTAAGTCCTGGGTTCTGTGGAAGGACATACAAACAG
Seq A exon
GTAAATTTAAATTTTTTTACATTTAGTGCCTTGATGGCAGCTCTGAGCTGAGAAGGTCTTGAATCTCGTTTATGGACTTTTCCATCTACTTTGGAATTATAATACAGATTGTCTTGCAATTAAAGGAAAAGTTAATCTAAAATGAAAATTCTGTGATCATTTACTGATTCTCCAGTTGTTTTAAAAAATGTTTTTGTTCTGTTGAACACAAACGATGATTAAGAACGTTGAAAACCTGTAACCACTGACATCTGTGGTATTTTTTTTTTTTTTTTTAACTGACACTGTCAGTGGCTACAGATTTCCAACATTCTTTAAAAAAATTATTTTGTGCTCAACAGAACGAAAACTGGTCTTGAACAAGTCAATGGTGGAAAAATGATGAAAGTTTTTCAATTTTGGGTGAACAGCACATATTCCATATTTCCTCCCTCAGGAGTTTTAGTCGAAGATGACCAATCTCTTCTATTATGCTGCTGCTTTCATGCAGTCAGAATTGTGGTTTTGCTGTTTGGTTTCTCGTTCCTATCTCCTTCCCTCAGCCTGAGCTGTCTCTTAATCCGTCCCTGACAGTTGATAGAGTCTCCAAGCTTAAGCCTAGTTTATACTCAACGCGTCCGCTAGTTCGCTTGAGTGAGTGCAGTGAATGTGACGTCATCGCAGAGTTTGCGGAGGTTCGCTTTGAGTGTGCATGACATGATTTTAGCTGGCAGAGGGCTTGAATTTTTTTTTAAACTTGAGCGAACAGTGCGTGCGCCATGTTTGATTTAAGTTGAATATGAATCACTTTTTAAAAATAATTGTGATCATAGGGAAAATCAGATGATCGATAATTGTTGGCTAGAAATTTTAGCAGCAGTTGGACAGGAGGAAAGTTTTTGTTAAAAGATTTGGAAAAACCTGAGGGACAAGTTTGTTAAAGCCAAAAGAGGCCATAGCAAAAGTGGAAACCCAGGCACACAATTACCAAATTATGTTTTTCCACCATCAATAGTTTTTTTTTTTTTTTTTTTGCTTGCCATAATAAAAATATATATTTGTAGAGCAACCCTCTTGTCATCAATACATCAATATTTTCACCGGTGGTGTCACCCACCCGTAAAAACAAAAATCTCCCAGTAAAACCCAGAATGTCATGCTGGAAACAGCGTCTATTTATCAATATGGAGCACGTCTGTCAAATAATGCTACATGGACTGTTTTGAGGATTGTATAGGAGGTGCAACGGCACCTGTAATGGTAAGGAAGGAAACCCCCAATTTTTATATTTATTCCAAAGTGTTTTTATGCCTAAATAAATTAAAGCACAGAACAGGCTCACATTTAAGAGCAAGGGGCTTCACCTGATGGTTCGGCGATATAGGTTGCATATAAGGAGGATCTGCTCTTTGATGCTTATTGCCGCCCTTCATAGAAAGATTAAAAACATGGGTAAATACCTTTACAGAATGATAGCGGGATAGAATTGTTAAATACGAAAGAATTCTGGGGAAAAAAGGGAGGCTTGACGGGTATGGTCAGATTGATCTCTTCAGCCAACGTTCTGACGGTGATTTGAGAGGCTGAATCAGGCCCAACAAGTCTGACAGTAACCCAATGAGAGGCGATGTGTGGAACACACCAGACCAATGATGACTGATGAAGCCCAACGGCCAACCATTAGCTTGATATGTCCCAATCCTTAATGAGGGATTCATTTACTTCATCATTCAGCTGATTTGTTCAAAACCACTGATTTATTAATAAATGAAGAGAGTATTTTCATGAATTGGTCATTAGCTATGTTTCTATCCAAAAATGCAATTAACTTTATAAGCAAAACTGGAATATCGCATAAAAGACGTGTGAATAAAGCAACATTTGCATCCAACTGTCAAACTGGCACCAAATATCAACAGTTAAAATGTAATTTGCTGTGGTAGGACAAGCTGCGCAAATGTTTTCTTTATTTTAGAAATAACCTGCACCTCAGAGGACAATGCCGACACGCAATGAACGTGTGGTGGCATTTGAAGTTGTGAATTGCGGAGCACATGCACTCTTGATGGTTCTGGGGGTAATTAATAATATAATAACACTAATACTGAAATGTTTAAGGTGTTTTAGATTGACCAAAACAACATTTCAGATGCTTGACAATGCGGTCAGTCTGCTGGTTTGTCTGTTCACACACGACACGTCTTATAACAAAACTACATGACCTTTTTTAACCTGCATACTGGAATTTATTCAGCAAAAGTGTTTCCATCATAGTTTCTTAAAGTTTATCACACTAAGTTATGCGTATACACTTTTTATGCACGTTTAAATAAAATAAAATAAAAACATATTTTTTTAAAATGTATGCATGTATCTAATAGGTGGATGGTTGGATACAATCCAAAATAAGTGGATGGAAACTAGCTAGTGTATTCATATATTCACTTGATGCAAACTGGACCACACCATTGCAGTGTTGCAGTAAAACTCCCATGTCTTGCTTGCGCTTTTATAAGTATTTTCATTTGGGAAAAATAAATGAGGCCCACAATATTGTCTAAAATGCCAGAATTATTTATAAAATAAAGACAGACTTCATCCCACTTAACACAGCTACACATAAATGGAAATAATATTAATACTGATGAACAAACATTAAATTGCAGTCTCAAACTACTCTGATGATACAATAACATTTGCAGACTCTAATGAGCCTTGACATTTATTTTTTAAATCCTTTTGCTCTTTATTAATAGGGAAGTGATGTAAAATGTTGGTGCAGTTGAACAGTGCAATGATGGTATAACAGCTGACAGGTCAGTAAAGTTTATTAGGTGAAAGTGGAGTTTCATGAACATGGGTCATGTGTGACAGAAGTGTCACGAGCTTTCACATGCATCTTATAAAATCATTGCCATGTATCTCTCAGCGACAAACTCAAACAGCTTCTGTGACCCACTTTTACTTGGCGAACAACCAGTTGATATGAACTCTGAAATAAAATAAATATCATACAGTCCTTTCATGCATACTTGTAACAGAAACCTGCTCTTATTTTTGTCTTCAATTGATTGAGGTGGCAGTTCGAGTGAAGTATTTCACTGTGGTGTTTGTTTACCGTCTCTGACAACTGTGATTCCTTTTGTTCACACAATTTCTATTAGACATTCTGGAAAATTATCTCTGGACACCCAGTTTAGACCTTTTGACCTCCTGAAAACGTTCCACCATTCACAAACAGTTGTCCAATTCTTTCTGTCTTTTTTTCTCTCTAG
Seq C2 exon
GGGACAGTGGAGGGGAAATGCTCTGCTCCATATGCCAGAATGAAAGCTCTGAACCCCCCAATGAAATTGTCATCTGTGACAAGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(46.6=100),PF0013017=C1_1=PU(9.6=17.9)
A:
NA
C2:
PF150571=DUF4537=PD(17.2=31.2),PF0013017=C1_1=FE(59.6=100),PF144461=Prok-RING_1=PU(71.8=87.5),PF0062824=PHD=PU(44.4=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]