GgaINT1018321 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12950859-12952444:-
Coord C1 exon
chr8:12952363-12952444
Coord A exon
chr8:12950955-12952362
Coord C2 exon
chr8:12950859-12950954
Length
1408 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
ACACTTCTGTCTTGTTCTAGGAG
3' ss Score
11.67
Exon sequences
Seq C1 exon
ATAAACAAACTGAAACAGAACTGCTTCATTATATTTGAGGACAGTTCCAAGTCTTGGGTTCTCTGGAAGGACATACAAACAG
Seq A exon
GCAAGAACTTCAGTGAAGTAGTCGTTGGGTATTTTATTTGTTTAGATTACTATATCTGTTAAAATAAATTGTTCCGTTGCATTTGTTTTTGTGAAAGAGCAATATAGCTTAAGGTGATGCAGGGTAATGCATTAGGCAAATTAAAAAACAAATTCTTTTCAAAAACTCTAGATCATTACAGTTACTTTTTTGTGTAACTGTGTAGTGGAACACTTCTAAAAAATAATTGTATTTGTTTACTTTGGTAGGGGAGTGTAATGCTGTCTTAACTGAAAACTCACAGAACCTCATTTGCATTGCATTGATTCTGTTCTCAGTTGAAACAGCATAACACGGGAAGAAAGCAAAGATTTGAAAATGCTAAATTTGAGTGGAATTATGTTTAAAAATAACACAATTACTGTGTAACACAGAAATCATTGCAGATTATTACAGGGTCTTCATGTACTCTAAAGAAATGCTCAAGTATCAAATGAGATGTCTGTTTCCTATTAACTTTGGATTTTTGGATGTTTAGGGGTGTAGGAATTATTACAATAATCTAATGCTAACAAAGTGTTCATGACAATTTCAGTGATGGTTTTGTTTGAAATCAGTGAAAACTTGCTCGTCAGATGAAAGTAATGGAAGTTCATGTGACTCCTTCTGATTCTTGATGTTTAAACAGACATTCTGTCTCTTAATGAGAAAAGCTTTGCATTCATAATACGAAAAAGCCCAAATGCTTCATTTCTGAGAAGCTTCTAAAAGATTGCTATTTGTCCTCTTACCGTGTGGCACTAACTAATGCTCACTAATGCATTTATGGTAAGGTGAATGTTAGTGCATGAGTATAATAGCACGTAGACTAAATAACTTGTTTTAATCTAGATTGTTACACCGATACGTGGTGTCACTGAAGCAAGATGAACTTTCATTTCCAGTATTTCTTTTTTCTTTGCTGTGTGCTTGGGCAAACCTATCAAAAAGGTATGCACGAAGTTGTGTGTATTATGTATAGAAAAAAAAAGAACAAGCTGCTGCGAATACAGAACATATCTATCAATTGTCCAGATAGGATTTCTTGATGTGAATTTTTCAGTCTACATTTGCATTACTTATTCACAGTTATTTAATTTTTATTGTTGTTAAGGAACCATGGAATGTACAGTAAATAGACAACATGTAACCTATATGAATCTGGTGGCCTGTGATAAATGATATAAATGCTTGTAATATATAAAGTCCATTCAAAGTGTCTGAGTTCATTTTTTGTTCAAGTGTTAGGCTCTGTAAAAATATGTCTGCAATGGATGGATCTGTAACTCATTTATAAAAACAAAAATCATATGCATGGTAATGGATCCGACTGCAGCTGTAGTCTGGAAATGACAACAAAAAAAAAAATCACACTTCTGTCTTGTTCTAG
Seq C2 exon
GAGCCACTGAAAGTGGGGAAATGGTCTGTACAATATGTCAGGAGGAGTATTCAGAAGCACCGAATGAGATGGTTATATGTGATAAATGTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(43.5=100),PF0013017=C1_1=PU(8.2=14.3)
A:
NA
C2:
PF150571=DUF4537=PD(22.6=42.4),PF0013017=C1_1=FE(65.3=100),PF144461=Prok-RING_1=PU(66.7=90.9),PF0062824=PHD=PU(44.4=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]