BtaINT0095840 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50510023-50510660:-
Coord C1 exon
chr3:50510560-50510660
Coord A exon
chr3:50510172-50510559
Coord C2 exon
chr3:50510023-50510171
Length
388 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ACTTTTTCCCTCTAATATAGAGG
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGTATCATCAGTTGTGTCACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGACAGTGTGTTTTTGCAACAACAACAAAG
Seq A exon
GTATCTTTTAAGTGTTTTGGGCTAATGCCCTAAATGGAAATTTGTAAGGCACTATCAACGTAATGATTGTGTACGTTGAAAGTTTATCTGAATGAAATGAGCAGTCAGTGCTGGGTAGAAAGAGGTACTGCTTATTGTTTGACTAATGATGCTTAAGTGACTTGCAACTATTCTTGCACTTTATTCTGATAGTGGTCTTGGAATTGGGGCAATAATTTGAAAGAAAAGACAATAAAATAAAGATTATTATTGGTCAAACAGTTTGTGATATGGTAAGAAATTGAGAATGAAAATTTCTTTGGAAGTTTCAGAAGCATTTTAAAATTAGAGAATTATATTTAAAATTTTATCCTTCACTCTTTTAAATAACTTTTTCCCTCTAATATAG
Seq C2 exon
AGGGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAATGTTACTGCTATTGTGGAGGCCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(36.6=44.1),PF144461=Prok-RING_1=PD(44.7=61.8),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCATCAGTTGTGTCACACAC
R:
TCTCCAGGGCCTCCACAATAG
Band lengths:
250-638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]