GgaINT0037222 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12949916-12950477:-
Coord C1 exon
chr8:12950377-12950477
Coord A exon
chr8:12950065-12950376
Coord C2 exon
chr8:12949916-12950064
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GGTGTATTTATTTCAAACAGAGA
3' ss Score
4.89
Exon sequences
Seq C1 exon
GTTATCATCAGCTGTGTCACACACCAAATATTGATTCCAGCGTGATAGATTCAGATGATAAATGGCTCTGTCGACAGTGTGTTTTTGCAACAACAACTAAG
Seq A exon
GTGTGTTACTTGAGATAGTACTTGACACGTATTACTTACATAATTGTTTCAGCTTGAAACCTGAAATTTCTCTTGTTAATTTGATGTGAATGGGAAAGCTGCATATTTTGGAGATAAATATTTATTTTAGAAATAGATGACATTTGCCTTGAATTAGCTTTTAAGTAAATATGCTAGAATACTAAAGCATAAGTATGAATGAGGGCGTTTAGTTGGATTATTGAAAAAATTTGGTAAATTTAAAATTGAAGTATTTGAAAGTTTAAGGAGTGTGTTAATATTTTTGTGAACTGGTGTATTTATTTCAAACAG
Seq C2 exon
AGAGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCACTGCAAGTCATGAAACAAACTTTACCATATAACGCAACAGACCTTGAGTGGGATGCGGGTCATAAAACCAATGTTCAGCAGTGTTACTGCTATTGTGGAGGACCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(24.5=35.3),PF144461=Prok-RING_1=PD(31.1=41.2),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATCAGCTGTGTCACACA
R:
TCCAGGTCCTCCACAATAGCA
Band lengths:
246-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]