HsaINT0105976 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93580545-93581175:+
Coord C1 exon
chr1:93580545-93580645
Coord A exon
chr1:93580646-93581026
Coord C2 exon
chr1:93581027-93581175
Length
381 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TTTTTTTCCCTCTAATGTAGAGG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GATATCATCAGTTGTGTCACACACCTCATATTGATTGCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAACAACAACAAAG
Seq A exon
GTATATTTTAAGTGTTTTGGGCTAAAGCTCTGATGGAATTTGTAAGACATTATCAACATAATGATTGTGTACACTGAAAGTTTGTTGGAATGAAATGAGCAATGAATGCTGGGTAGAAAGAGGTGCTATTTATTTGACTAATGATGCTTAAGTGACTTTTTAATGATGCTTTCACTTATTTGATGATAGTAATACGGGAATTGGTGCAGTAATTTGAAAGAAGAAAAGAAAAATAGAGATTATTATTAATCAGACAGTTTGTGATATGGTAAAAGTTTGGAAAGGAAATTTCTCCAGAAGTGTCAGAGTCGTTTTTAAAGTATAGAATTGTGTTTAAAATTTTAGCCTTCACTCTTTCACATTTTTTTCCCTCTAATGTAG
Seq C2 exon
AGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGAGGCCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_001164392:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.8=44.1),PF144461=Prok-RING_1=PD(48.2=79.4),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCATCAGTTGTGTCACACAC
R:
TCTCCAGGGCCTCCACAATAG
Band lengths:
250-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)