HsaINT0105976 @ hg38
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29535]
Coordinates
chr1:93114988-93115618:+
Coord C1 exon
chr1:93114988-93115088
Coord A exon
chr1:93115089-93115469
Coord C2 exon
chr1:93115470-93115618
Length
381 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TTTTTTTCCCTCTAATGTAGAGG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GATATCATCAGTTGTGTCACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAACAACAACAAAG
Seq A exon
GTATATTTTAAGTGTTTTGGGCTAAAGCTCTGATGGAATTTGTAAGACATTATCAACATAATGATTGTGTACACTGAAAGTTTGTTGGAATGAAATGAGCAATGAATGCTGGGTAGAAAGAGGTGCTATTTATTTGACTAATGATGCTTAAGTGACTTTTTAATGATGCTTTCACTTATTTGATGATAGTAATACGGGAATTGGTGCAGTAATTTGAAAGAAGAAAAGAAAAATAGAGATTATTATTAATCAGACAGTTTGTGATATGGTAAAAGTTTGGAAAGGAAATTTCTCCAGAAGTGTCAGAGTCGTTTTTAAAGTATAGAATTGTGTTTAAAATTTTAGCCTTCACTCTTTCACATTTTTTTCCCTCTAATGTAG
Seq C2 exon
AGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGAGGCCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033:ENST00000370298:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PD(44.7=61.8),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCATCAGTTGTGTCACACAC
R:
TCTCCAGGGCCTCCACAATAG
Band lengths:
250-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development