DreINT0098431 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10838785-10839935:-
Coord C1 exon
chr2:10839835-10839935
Coord A exon
chr2:10838934-10839834
Coord C2 exon
chr2:10838785-10838933
Length
901 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTGTGTCTCTGAAATCGTAGAGA
3' ss Score
4.47
Exon sequences
Seq C1 exon
GATACCATCAGCTTTGCCATGCTCCTGTAATTGACTCCAGTGTCATTGACTCTGATGACAAATGGCTCTGCAGACAGTGCGTGTTTGCCACAACAACAAAG
Seq A exon
GTTTGTTGATGTTGCATTCTCTCCGCCTTGCAGAATAACTAGTAATAAATATTAAAAGATCTGTAGCAGACCTCCGAGTCATTTCTAACTGGTGTGGACATGCTTGCTGGGACTGCAAAATAACTAAATCTTGCAGAATGTTAATTTTTCAGTTGCAATCCTCAAGTTTGAACCACTCGTATAGATTTAGATTTGTAGTTTTAACTTTGTTTTTTGACAATGTATATTTACTGTCAATTTTAAAATAAGTAGTTATCAGATATAGGGTTGGGTACCGAAACCGGTACCTTTGGAACCGGTATGCACCGGACCAAATCAGCATATGAATTTCTGGTGCTGCGACAAGAAAGTAAAGCAGATCACACCAGAAGCGGCGCCCAGCCACGACTCATGACTGTTTACGTTTCTGCCGAGCCACAAAGCGCCAACTGAATCCACATTAAAACCGGTTAATCAAACGACATTGGTTGGACGACTACTACTTTCTAAATAAATGAAAGACAGTTTCTGTTAGAAATTTGCATATTTAACTTTTACATTAAAAATATATTTATTTTATATATATTTTTAAGTAACTTAAAATGTTTGATCTTTTTGAATTTGATCAATTTGAAAATGTCCTTCCATATATTAATGCATCATTGTCTAATAAAGTTAGAAATGATTTAAAAATACCTTTCTAACCCCAAACATTTCAACAGTGGTGTAAAATGCAGCCAACCCTTTGAAATCCCTTGACTCTCTTCGTGTTTTGCTTGTATGACTAGAAGAGATATGTAAAGCCTGTTTTGAATAAATCTTCAGAGTTCTGACTCCACCTTAGAATGATATGACTCCACATGCAGGCCAGAGGCTTGTTTATCTATCACGACTTGTTGTGGTTGTGTCTCTGAAATCGTAG
Seq C2 exon
AGAGGCGGTGCACTAAAGAAGGGGCCAAACGCCAAAGCCCTACAGGAAATGAAGCAGTCTCTACCATACGCCCTTGAAGAATTAATGTGGGACCAGGGCCACAAGACCAACATCCAGCAATGCTACTGCTACTGCGGTGGACCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.8=44.1),PF144461=Prok-RING_1=PD(25.6=29.4),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCAGCTTTGCCATGCTC
R:
CTCCAGGTCCACCGCAGTAG
Band lengths:
246-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]