MmuINT0101697 @ mm9
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108516315-108517108:+
Coord C1 exon
chr5:108516315-108516415
Coord A exon
chr5:108516416-108516959
Coord C2 exon
chr5:108516960-108517108
Length
544 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GTTTTCCTTCTAATATGTAGAGG
3' ss Score
4.7
Exon sequences
Seq C1 exon
GATATCATCAGCTGTGTCACACACCTCATATTGACTCGAGTGTGATTGATTCAGATGAAAAGTGGCTTTGTCGACAGTGCGTTTTTGCAACAACTACAAAG
Seq A exon
GTATCTTTTAAAAGTGTTTTGGGGCCCATTGGACTTGCAAACTTTATCTGCCACAGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGAGAGGGTATGGGGGACTTTTTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAATATAAAATAAAAAAAAGTGTTTTGGGCTAAACATTATTAAATAGAATTTGTAAAGCCTTATTGAAATGACCATGTTTGTTCTGAATGAAAGTAGCAGCTAATGTTGGTTAGAATTGTTTTATTAATGATCCTTAAATGGCTCGTAGGGTTTTTTTTTTTGTGCTTTCTGATAATGGTGTGGGGAGTAGGACAATAAATTGAAATAATATAGTAAATGCATTATTAGTAACAGACCAGACAATATGGTATCATAGAAATTCAGAATGGAAATTATTTCAGAAGTGTCAGGAATTTTTAAAATGTAGAATTAAAAATTAGAAAATTTGGTTAAAAAACTTGACCTTCACTTTTTTAAATGTTTTCCTTCTAATATGTAG
Seq C2 exon
AGGGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCTGACCTTGAATGGGATGCAGGCCATAAAACCAATGTCCAGCAGTGCTACTGCTATTGTGGAGGCCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-Mtf2:NM_013827:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.8=44.1),PF144461=Prok-RING_1=PD(40.8=58.8),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATCAGCTGTGTCACACA
R:
TCTCCAGGGCCTCCACAATAG
Band lengths:
248-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: