RnoINT0095105 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2679717-2680365:-
Coord C1 exon
chr14:2680265-2680365
Coord A exon
chr14:2679866-2680264
Coord C2 exon
chr14:2679717-2679865
Length
399 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GTTTTTCTTTTAATATGTAGAGG
3' ss Score
5.84
Exon sequences
Seq C1 exon
GATATCATCAGCTGTGTCATACGCCTCATATTGACTCGAGTGTGATCGATTCAGATGAAAAGTGGCTTTGTCGACAGTGCGTTTTTGCAACAACAACAAAG
Seq A exon
GTATCTTCTAACTGTTTTAGGCTAAACATTACTAAATGTAATTTCTAAGGACTTACCATTGAAATGACTGTGTACATTGAAGAGCTTGTTCTCAGTGAAATTAGCAGCTAATGTTGGTTAGTAGAATTGTTTTATTAATGATCCTTAAATGGCTCGTAGTTTATTTGTATGTGTTCGTGCTTTCTGATAGTGGTGTGGGGATTAGGGCAATAAATTGAAAGAATACAATAAAATAAATACATTATTAGTAGCAGATCAGACAATATGGTGTCATAGAAATTCAGAATGGAAATTATTTCAGAAGTGTCAAGCATTTTTAAACTATAGAATTAAAAATTAGAAAATTTGGCTAAAAAACTTGACCTTCACTTTTTCAAATGTTTTTCTTTTAATATGTAG
Seq C2 exon
AGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCACTGCAAGTCATGAAGCAGACATTACCCTATAGCGTGGCTGACCTTGAATGGGATGCAGGTCATAAAACCAACGTTCAGCAGTGCTACTGCTACTGTGGAGGCCCTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.8=44.1),PF144461=Prok-RING_1=PD(40.8=58.8),PF0062824=PHD=PD(53.7=85.3)
A:
NA
C2:
PF0062824=PHD=PU(15.1=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGCTGTGTCATACGCC
R:
TCTCCAGGGCCTCCACAGTAG
Band lengths:
246-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]