BtaINT0096224 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43375868-43379745:+
Coord C1 exon
chr16:43375868-43375985
Coord A exon
chr16:43375986-43379493
Coord C2 exon
chr16:43379494-43379745
Length
3508 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CTCTCATCCCACCCCCCCAGGCC
3' ss Score
9.8
Exon sequences
Seq C1 exon
ATGTTTCCTGAAACTCGGGGAGTGGCAGCTGAACCTACAGGGCATCAACGAGAGCACGATCCCCAAAGTCCTGCAGTACTACAGCGCCGCCACAGAGCACGACCGCAGCTGGTACAAG
Seq A exon
GTAACCAGAGATGGGAGTGAGCCGGGCTCCCCACCGCTGCCTCCAGATGCCGGCCAGTGCGCCCCAGGGCGCTCATGCTTCACCGCAGAGCCTCAGTGGCCTGGTCTGGTACCACGAGTTTGATTCTTTGAGTGCCAAGAGCTAGTCAGTCAGAGGTCTGACTGATAAAGAAAGATTGAGAGATTCTTTCACTTGAAAAAGATTTATTACACCATGAGTGTGTGCATGGCTGTGGAGATGCTGTTGTCTTTTTATTCTTTTTTTAATGAGAATATAGTTGCTTTACAGTGTTATGTTAGTTTCTGTGTACACTGAAGTGAATGAGCTATGTGTGTACATATATCCCCTTCCTGTTGGACCTCCTCTTACCACCTCCCCTTATAGGTCATCCCAGAGCAGAGCTGAGCTCCCTGCGCACTAGCTATCTGTTTTACACACAGTAGTATATGTATGTCAATCCTAATTTCCCAATTCGTCCCACCCTCCCCTAATCCCTTGGGCCCACATGACCACCCTCTACATCTACATCTTTCTTCCTGCCCTGCAAATAGGTTCATCTGTACCATTTTTTAGATTCTACATATATGTGTTAACATGCTATGTGTTTTTCTGACTTACTTCACTCTGTGTGACAGACTCTGGGTCCATTCACATGTTTACATATGACCCGATGTTGTTCCTTTTTATAGCTGAGTAATATTCTGTTGTGTATTTGTGCCACATCCTCTTTATCCATTCATCTGTTGATGGGCATTTAGATTGTTTCCATGTCTTGGCTATTGTAAATATTGCTACAGTGAACATTGGGGTACATATCTCTTTGAATTATGATTTTCTCAGGGTATATGCCCAGTCTTGGGATTACTGGGTCCTGTGGTAGTTCTTACGGTAGTTCTATTACGTTTTTAAGGAACCTCCATACTATTCTCCATAGTGGTTCTATCAATTTACATTCCCACCAGCAGCACAAAAGGTTCCCTTTTCTTCATACCCTCTCCAGTCTTACAGACTCTTAGCAGCTTGTTTTCCTAGACCATGTGGACACACAGTTAGTCTCTGGAACTTTATCTTCCCTTGTAGTCTCTGGAACTTTATCTTCCCTTGGGTCATCTGTTCCTTCCCAGCTTCTTTATGATTTCCATCCCTGCCTGCTCCTCATCTAAGAACTGAACTTTCTGTTTCTGTTGGAAAGCTCTGTTTCCAGAGTAACATCCTGTTATATAATAGAAAATTTTTCAAGAAGATAGAGAAAACTAGAAAATGTATAAAAGCTTGACTGGTAGAGGAATAAGTCTTGGAAGTACACACCTCCGGTGAGAGCATGCTTTCTCATGTTTTTTTTATATCTTTTCTGAGGGGCCTCCTGGTTAGACTGCCTGTGAGGCAGATGTCATCCACTCCTTTCCGGTGTCTCTTTAACCTGCTAATACTCTGGGAATGAATCCCTCTGGGGTCAAAACCTGCATCTGAAGGCCCTAGAAACATCTACAGTAAAATTCTTGCCATGCTTTAAGCATGTATCAGTCTGATCTGAAAAATGCCCATTTTGTGAAAGCAGCAGTAATTATTCTCTCTAGGACAGCTTCAGTCCAGGACTGGAAGAATATGTCCAGTGAACCTTTGACCAGCTGGAGCCTTACTAATTAGAACTGTGTCCTAACCAGATTGCTTTCCTTCAACTTTTCTGAAAGAAATGAATCAAAGGAAAAAAAAAAAAAAAAAAACTGGCTTTAGTCTGGGCCTATTGAGTCTGTGCTGTCGTCTCCCATCAGTGATGCATGTTAGTCCCACGTGCCTGCAGGACTCTTTCTGTCTTGTTTGCTGTGACCCCCCAGCTCACTGTACATATACAGGTATTTGTGGATTAAATGAAGTTATGGGAAAGCTGAGCCTAGGTCACTGTAGGATTCTTATTCATCAAGTAGAAGTTGATTGTGATTCATCTACTCTGCTTGGCTGGGGAAATGGACACTTCTATGTTAAAGCAAGGTTTTTAGCAAGGGATTCAAAGAAATATACCAGTTATCCAGAAAGTTCCAACTATGAGTGAATTATTTAATGTCTTGCTGTCATCGCAAATTTACAAAGTTCCAAATCAAACTCTTCCTCATTGCCCTGTGCACCAGGCAATGCTATCTCAAAGCATTACTACGGCTCAAACCCTCAGAGGTGTGAGTAGTTAGCACCAAAGGCTTCTTCTGGCTGGCAGTCACTGGCCACTGATCTCTGACAGGCCCTCAGCCAGGTGTGAGGGACAAGCAGTGACCACGAGTCACCCTCCATGGCTGGCCTGTTCTTTTAGTGTGCCCCCTTTCCCACTGTTCTCTGCCTAGTTAAGACCTCTGCCTTCACTCTCTGAACTTCTGCTCTCCTCCATCATCTGTTTTGTATCTGCTGCCAAAGGAATTTTTCAAACCCAGCTTTTAACCCATCTCTTTTTTTTTTTTTTGGCAGAGCCACACTTTGTAGGATCTTAGTTCCCTGACCAGGGGCTGAACCCAGGCCCTAGCAGTGAAAGTACCAAGTCCTAATCACTGGACCACCAGGGAATTTCCTTAAGCTCTTTTTTTTTTAAACTATACTTGTTTATTTGCTCTTGGCTGTGCTAGGCCTTTTTTGTTTTTCTCTAGTTGCAGCAAGTGGGGGCTACTGTCCGGTTGCGGTGCGCAGGCCTCTCACTGCAGTGGCTGCTCTTGCTGCAGAGCACAGGCCTCTGGTGCACTGGCTTCAGTAGCTGCACAGCCCTGGCTCTAGAGTGCTGGCCCAGTAGTTGTGGTGCACGAGTTTAGTTGCAGCACGTGGAATTTTCCCAAATCAGGGATCGAACCCGTGTCGCCTGCGTTGGCAGGCAGATTCTTAACCACTGACCTTCAGGGAAGACCCTTAGGCCATCTTTCAAAGCTCTGTTGGGAATTCCATGCCCTCCTGTGTGTGTCCTGAGCTTCAGGCACATGTCTATTTTCTGTGAACCACGCTGCTTGCCCACCTGCATCTTCGTCCCTGTTCTTACAGGACATCCTTGCTGTGCCTTCCTATTCCCTCCTCACCCATCTGGCATGGCTCAAGACTTGCCCCAAATCCCTCCTCCATGAAGCCTTCCCAGCCCTGCACCTGGCATTCCCGTTGTCTCTCTCTCGTTGCCCCTGTCCCATTCTGCCTATTTGTAGGTCTTTGAGCAACCTCTTCTCTAGATGAAGAGGTCCTGAGTCAAGGCCCATGGCGTGCTTCTCTTCACAGGCCGCCCCCATCCTATGTCACCCGCCGAAGTCCCTGATGCAACAGATGCACCACAGGATGAATGATCACACTGGACTTAGTGAAACGCCCCATTCCCAAGTGTTCTGCTGAAGTGAAGTGAGGATTCGCTTTACTGACCACTGAGAAGAAAGGGCAGCCCTTGCTTAGCCTCAGCTGTGGCCTCACACCCCTCGAGGCCCTTGATACCCGAGCCTCCTGCCCCAGCTCTTGTCACAGCCCCCGTGTCTGTCCTCTCATCCCACCCCCCCAG
Seq C2 exon
GCCTGGCATGCGTGGGCAGTGATGAACTTTGAGGCTGTGCTCCACTACAAACATCAGAACCAAGCCCGCGACGAGAAGAAGAAGCTGCGACACGCCAGTGGGGCCAACATCACTAACGCAGCCACTGCTGCTACCACAGCGGCCACGGCCACTGCCACCACCACCAGCACCGAGGGCAGCAACAGCGAGAGCGAGGCTGAGAGCACCGAGAACAGCCCTACCCCGTCTCCTCTGCAGAAGAAGGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0225918=FAT=FE(9.8=100)
A:
NA
C2:
PF0225918=FAT=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development