DreINT0098836 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46124762-46126983:-
Coord C1 exon
chr8:46126866-46126983
Coord A exon
chr8:46124960-46126865
Coord C2 exon
chr8:46124762-46124959
Length
1906 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AACGGATTGTGTCTTTGCAGGCC
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTGTTTTCTGAAGCTGGGGGAGTGGCAGCTCAGCCTTCAGGGCATCAATGAGAGCACCATCCCTAAAGTCTTGCAGTATTACAGTCACTCAACGGAGCATGATCGCAACTGGTACAAG
Seq A exon
GTACAAAACCCTCACAAACTTTAAAGAAGTGTGGATGAATATTTGTGTTGCTGCAAATGAATAGAATTAGTATGGTCATCAATGGGCTATCGACTTTTAATTTTCAGTCAGGCCGCCCAAAAGCTTTAGGTGAGCTGTCTTTCGATTACAAAATTGTCAGGTTTAGGATTTCTTCAAAAATCAGCGATCTTCAGTGCCTGTTAAATATACAATATGAAGTGGGTCTCGGATTGGACAAGAAGCACTGCATTAAATTCCATTTCCTCCCGCCATGTCTTTATAATATGACAGTTTATTTTACCCCAGTATTTTCAATGGAATTTCTGCGCTAGCCGAACAATGGTTACAATGGTCTTTTATCTCGTTTCACTCTTGAAAAAGTGAATGAATACTTAAGTCTCTTTAACTGAATGTATTGTAATTACATTACAATACAAATGCTGTAAAACAACCTTTTGAAATTGAAAATAGTAAGAGTAGTTTTTCATAAAAGGCAAATATGGTGAAAAATCTACTTTTCAAGCTATTTGGACAGACATATGTGTATATATAGTGTACAGACCGTCATATTGGGGTGATATAAACACACCCAATCCTTTTTTTCAATTTAACAACATAAAAATGGTGGACCAATTGGAGCGGTTTTCAGACTGACCGCAACTTTACGTAGGAGTGCGGTCCCCCCGCCCACCGAATTGATTGACAGCTGCGCGCATTAACATGTTCCGGTAGTCACGTGTATATGTCAACAAGACCAGGCAGACATACGCAAAGCAACTGGGAATAAAAGGTCTGTTCTGTTCGCTAGGATCAGCAATCATCATCAAATGTGATTAAGAGTAAGTTTCACATGTTTAAAGTGTTTTAAAACAGTGCACGTGTGTAATTAATTACAGCGATTTACTTCAGCTTTACTTCATCAGCACAGCCGCGTGTCAGAACAATTATAAAAGAAGACGCTTCAAACCCTGTTTGTGGAAGTCAAATCAGGTTTATTTTGTAGATTAGCATAACAGATATCCACACAGTACTGGAGGTTAGCCTGTATCCTGTCATATTTGAGTGCAAAAACAGTGCTAAGCTAAGCACGCTCTGTCTATCTGCCTGCCTGCCTGCGTGCGTGCGTTTGTGTGTGTGTGTCAGCTGCGGTGTGCGTGTGTTTCTCTGTGTGTGTGTGTGTGTGCGCGCGCGTGAACTTTGTAACGATATTGTGTGTGACTCATCAATGCAACTTCACAATACTGATTAGTAAAGCTTAGTTCTTACTGTAGTATTTCTCACAAACGCTAAGTGAGACCTTCTTTCTTTAAGTCTGTTTGTTGTCTGAAGCAGCTGAGGGAGGAGATTAAAGCACGCGGGAAGGCACGTAGACACAGTAGGTGGGAAAGACTCGTCTTAAAGGCGCAGTACGACAAAACCACCCCCTGCTGGAAATCAGTATAAAACAGCATCTTGTAAAAGGTTTAATGAAAAATCTGATGGGTGTTTTGAGCTGAAACTTTATATACACACTCTAGAGACGCAAAAGACTTATATTAAATCTGAAAAAAGGGGTAACCTAGGTGCCCTTTAATGTTTGCCATGTCTCACCAAAGGGCACGAAAATGTAAAAAAAAAAAAAAAAAAGATCCAATTCAAAAGTGAAAAAAAACTGTAATGTTGTTTATTTAACATTTTGTGTTTTCATGTGTTTCTTCAAAAATAGTGTTTACAAAAAAACCCATCCCATGTCAATTTTATCAAACCAAAATCTCATTCGTATTGATCTTCATTTGACGTTTATGATGTCATGACATAGAAATTCTTGAAAACACTACAGTTTAAGATGTTAAAATACAGATTTTGGAAAAAAAAAAATTTGTAAGTAAGATTAAAAACAACAAGATAACGGATTGTGTCTTTGCAG
Seq C2 exon
GCCTGGCATGCTTGGGCAGTAATGAACTTTGAGGCCGTGCTTCACTACAAGCATCAGAACCAGGGCCGCGATGAGAAGAAGAAACTGCGACACGCAAGCGGCGCCAGCGCCAACAGCGAAGCCAGTAACAGCGACAGCGAAGCCGACAGCACCGAGCACAGTCCCGTACCCTCACCCGGACAGAAGAAAGTCAACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0225918=FAT=FE(10.3=100)
A:
NA
C2:
PF0225918=FAT=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTTCTGAAGCTGGGGGA
R:
TGACTTTCTTCTGTCCGGGTG
Band lengths:
311-2217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]