HsaINT0106392 @ hg38
Intron Retention
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11130529-11133197:-
Coord C1 exon
chr1:11133080-11133197
Coord A exon
chr1:11130778-11133079
Coord C2 exon
chr1:11130529-11130777
Length
2302 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TTGCCTTTCTCCCCAACCAGGCC
3' ss Score
10.07
Exon sequences
Seq C1 exon
ATGCTTCCTGAAACTTGGAGAGTGGCAGCTGAATCTACAGGGCATCAATGAGAGCACAATCCCCAAAGTGCTGCAGTACTACAGCGCCGCCACAGAGCACGACCGCAGCTGGTACAAG
Seq A exon
GTGATCAGAAGCAGGCCACCTGTGAGACCCAGCACCCTGGCTGGCTCGTGTCCTCCTGTGTGCTCGTGGTTACAGCTGAGCTTCTGCGGAGCTAGGCTGATGCTGTGAACTTACTCCTTGAGTCCCTGGAGCCTATCTATAAGAGGCCCAGGGAGCCTGCATTTCCCCCTACAAGTTTAATTAATACAGAAAGATTATTGGAGAAATACTTGTTACACCATTATTATGTGTATGTGGTGTTGGGGATTGCTGCTGTCTTACAGACTCTGAGCTGCTTGTTTTCCTGGGAGCATCTGGACACATGGTTAATCTCTGGAGTGACATCTTCCCTTAGGTCATCTGTTCTTGTTCAGCGTTTTTCTGATTTGCATCCTTGCCTGCTCCTCAGCTAAGAACTTAACTTTCTTTGTTTTTATTGGAAAGATCCAAGTAACATCCTGTTATGTTACAGGAAACTTTTGAAAGAGATAAACAGAATTAGAAAATATATAAAAGATGTGATTGATGGAGGGGTGATTTTTGGAAGTGTATATCTTTGGTGAGAATATACTTTCTTATTTCTTTTTGAGAGGCTTTCTGGTAACTACTTGGTGTGGCAGATGTCATTGACATCTTTCCAGTATTTCCTTGGCTTGCCAATACTTTGTGAATTAATCTCTCTGAAATCTAAACTTGTATCTGAGGACTGCAGAAGCACTTATAATACAGATCTTACCTTTGTTTAGGCATGCTTCATTCTGGTTTGAAAAATGTCCATTTTGTCATAAGAGTAATACTCTCTCTAGGACAGCTTGCATGTCCAAAGCTGGAAAATACATCCGGTAAACACTATTAACTGGAAGCTTATTAATCAGAGTTGTATTCTAACCAGAGTTACTTTCATTCATTAAGCTTTTAGGAAGTAAGCAAATCACAAGAAAAAAGTTGGTTTCAGGAACTTTAGTTTTAGTTTTTAAAAGCTTTTCCTAATGTGGGTCCCTTTTGTTTTATGATGTATTCTACCATCAACGTCATGGCCCTGTATGCATGCCAGGACTGTTTGTCTTGTTCACCTTGACCCCAGGTCATTGCCAGGCACATAGCAGATACACAAGAGATATTCAGTGAATAAATGAAGGTATGGGAAAACTGAAACCTGGGTCATTGTAGAATTCTTACTCATCAAGTAAAGGTTAGTTGTGATCAATCTATTCTCCTTAGTTGAGAAAACGGATACACCTGTGTTCAAGGTTTTTGGCAAGGCATACAAACGAATTTCCCAATTATTCAGAAAGTTCAGCTATTAATGGGTCACGTAGTGTCCTACTATCACTGCAAAGTTACCATGCCTGGAAGCAAACTCTGCCTCACACTCGCTAAACCAAGTGGTGGTACGCTGTAGAGTCATTGCCGCTCAGAACCCCAGAGAGAGTAGTATTCCTTTATCCAAATAAGCACCAGCGGTTCTTCCTTCAAGCATTGAGCACTGGTTCTCTGTCAGGCCGTGGGCTAGGTGTTGGGACCAGGCAGATGGGTGAGATTCTTTCTCTGTCAGGCTCCTATGCTCTTCATGTCTTCCTTTGTCCACTATCTGGTGACCTGTCAAAACTTTGCTCCCTTGAAATATTGTGATGACTGCTGCTTGCCCCCACTTCTGCTTGCCATTTCTGCTCTCCCCTAAATGTACACTTTATACCCAGTGCAGCTCTGCTTTCTGGGTGAAAGTGCCAGCCCTGTGCCTGCTCCAGGCGTGCTTTGCTGGCCTCGCTCTCACTCCTCGCCTGCATGTATCCCCTGCACGGTCACATTCATGGGCTTGTTTCCCGTGAACCAATCTGCACATCTCTGGCCTTATTCTTCCCCCTTGCCAAGTAGTCCCCACCGCTGCCTTCTTGTTTCCCTCCTTGCCCTTCTGCAGCTCTCTTCCAGACCTACCCCAAATCCCTCTTCTTGACAAAGCTTTCCAAATGCCTGTCCTTGCTACTCCCATTGTGCCTTGCAGAGTACCTAGGTCTTCAGGTTTGTGCGTGAGCTCCCCTAGGAGGCCGGGAGATCCCTTGAGGCAAGAGCTCTCTCCTGCTCCTCTTGCTGTGCCCTTCTCGCAGTGCACTCATAGTACGTTATATAGTTAGTGCTCCACAAAGTGAGTGGATCATGTTGAATTTAGTAAAACAGCCATTTCTGAGTGTCTCCTTGAAGTGTTTGCTTTATGGACACACAGAACAGGCAGGAGCAGCTGTTCCTCAGCATCGACCTTGCGCTCCTCTGAGCCCTGCTGTTGGTCACAGCTCCAGTGTCTGTCCTTGCCTTTCTCCCCAACCAG
Seq C2 exon
GCCTGGCATGCGTGGGCAGTGATGAACTTCGAAGCTGTGCTACACTACAAACATCAGAACCAAGCCCGCGATGAGAAGAAGAAACTGCGTCATGCCAGCGGGGCCAACATCACCAACGCCACCACTGCCGCCACCACGGCCGCCACTGCCACCACCACTGCCAGCACCGAGGGCAGCAACAGTGAGAGCGAGGCCGAGAGCACCGAGAACAGCCCCACCCCATCGCCGCTGCAGAAGAAGGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793:ENST00000361445:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.752
Domain overlap (PFAM):
C1:
PF0225918=FAT=FE(9.8=100)
A:
NA
C2:
PF0225918=FAT=PU(66.4=98.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development