GgaINT0133933 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4144680-4145376:-
Coord C1 exon
chr21:4145259-4145376
Coord A exon
chr21:4144887-4145258
Coord C2 exon
chr21:4144680-4144886
Length
372 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTCTTCTCTCCTGTTGGCAGGCC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTGTTTCCTGAAACTGGGTGAGTGGCAGCTGAACCTGCAAGGCATCAACGAGAGTACCATCCCCAAAGTCTTACAGTACTACAGTGCTGCAACAGAGCATGATCGTAACTGGTACAAG
Seq A exon
GTCAGTAAGGAAAGGTTCCAAACAGTGCACAGAGACAGTGAATGATCACATCTCCATTGTCTTTTTCCCATTACACCTACTTAAGCTTTGAAGAATTAAGGAGTATGGGAAGGTAATGTGATTTATTTCTTGTTCCTTTGATGCTATAACATCCAATATGGAGCTCTTGACTGAGAGCTCACCATGATGTTAAGATAATAAGGCAATAAAAACTTCAAATGATTAGAGAAAGCAAAGCATTGTGTTGTCCGCAGGGTATTACTTCTCATCTCTAGACTCAGAAAGGTTGAACTATTACCTAATACTCAGTACAAGTTGCAGAAAGGATTCATCTCCACCATTTCTGTTGAAGTTCTTCTCTCCTGTTGGCAG
Seq C2 exon
GCCTGGCATGCCTGGGCAGTGATGAATTTTGAAGCAGTGCTTCACTACAAGCATCAGAACCAGGCCAGAGATGAGAAGAAGAAATTGCGTCATGCCAGTGGAGCCAGTATCACCAGTGCCAACACTGAGGGCAGCAACAGTGAGAGTGATGCGGAGAGCACAGAGAACAGTCCCATCCCATCTCCAGTGCAGAAAAAAGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0225918=FAT=FE(10.2=100)
A:
NA
C2:
PF0225918=FAT=PD(12.1=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGAAACTGGGTGAGTGG
R:
TTTTCTGCACTGGAGATGGGA
Band lengths:
310-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]