RnoINT0095473 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165351521-165353324:+
Coord C1 exon
chr5:165351521-165351638
Coord A exon
chr5:165351639-165353075
Coord C2 exon
chr5:165353076-165353324
Length
1437 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTCACCCCGTGCACCTAGGCT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTTTTCTGAAACTTGGGGAGTGGCAGCTGAACCTCCAGGGCATCAACGAGAGCACCATCCCCAAGGTGCTACAGTACTACAGTGCTGCCACAGAGCATGACCGCAGCTGGTATAAG
Seq A exon
GTGAGGGAGGCCAGCGCTGGCCGCAGACCTGGACTCTCCACAGAGCCTGCACCCTGTTTGAATTCTCCCATGTTCTCACAGTCACAGCCAGGTCCCTGGAATGCCTAGAGTCTGTCAGAAACCCAAGAAACTTGGACTTTCCTTTAGGAATTGCAGAAGCTGATGGAGGCTTTGCTTTGAGGGACACTTCCTGTGATGCCCTTGTTCTAGTAGCTCTAGGGCCACAGTGTCTGATAGCCTCTCAGAAAATATGAACATGGCTTAGCTGACTGACTAGTGCAGGGGCTATTCCTGGAAGTGTGTGTTTTTGGAGGCGCACCTTTTTTTCATTCCTTTTCTGAAGGCTTCCGGGTATTAGCTCTTTTATATAACAATCTCATCAATTTCTTTCCAAAATCTTCATCCTTACTAGGAAGTTATAAATTCTTCCCTCTGGGATCAAAGTTGATTTGAAGAAAATATTAACATTTGGAATAAAAGATATTTATCCTCTGCAGATGCTTCACGCTGATCTGAAAACTGTGTACTTTGGCTGGGGATGCAGCTCACTGAGAGCATTTACCAACATGCACAAAGCTGGGCTCCATCCCCAGCAACATGCATATGCACACATGCACACACGGAGTCTGGTCTACGATAGGTCCCTGTTGATAGCTGCATATCCAGAGCTGGGAAATACATGCAGTGAAGTTTTGCTCAGTGGGAACCTTGTTAGTCAGCTCACAGCCACCTCTAACCCCAGGTCCAGGGGTTGGCATCCTCCTCTGCCCTTCACAAGCACTAGGCACACATGGGGTGCACATACATATATTCAGTCAAGCATCCATTAACATAAATATGTGGGGAATCTCAGGAAGCCCACTTGCTCAGGTGGAATGGGCTACTTTGGCCCACACATGGACTCTACTGTCTGGTGTTCTAGCACTTGGCCAGTGGCCCTCACTCTCCTGTGGGCTTCGAGCTGCAGGCACAAGTCTCCTTGGACTCTGCACATGCCTTCCATGTACCTACATTTTTCCCTGCCAGGAAGACCAATTGCCTCTATCTCTGTTGTTTCCTCCTTGTTCCAGGGCAAGGCTTAGCCACATCCCTCATTTTACGGAGCCCTTTACGTCACTGGCACTCCCATCTCCCACCTTTTCTAGCCCCGTCTGCCTTGCAGTCTGTGGGCCTTAAGGTTTGTGGGCAAGCGCCCCTCTTACTGTGACCTTACAGTGCTCACCAAAATCCCGGTGTCATTAATGCTCTCAAGATGAACAAACCACACTGGTTGTAGTAATGCCCACTTCCTGGGAGTATGTGGAATTAGAGACTCATTCTGCTGATCTCAGGGCTCAGTCCTCACTGTACACTCAGGACCCAGCCTCCACTCCTCCAGGCTTTGCAGTAGATTCCACTAGCCTGTGTCTGCCTTTGACTCTCACCCCGTGCACCTAG
Seq C2 exon
GCTTGGCACGCATGGGCAGTGATGAACTTTGAAGCCGTGCTACACTACAAACATCAGAACCAAGCCCGCGATGAGAAGAAGAAACTGCGCCATGCCAGCGGGGCCAACATCACCAATGCCACCACCACTGCCACCACCGCTGCCTCCGCTGCCGCTGCCACCAGCACAGAGGGCAGCAACAGTGAAAGTGAAGCCGAGAGCAATGAGAGCAGCCCCACCCCGTCCCCTCTGCAGAAGAAGGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.723
Domain overlap (PFAM):
C1:
PF0225918=FAT=FE(9.8=100)
A:
NA
C2:
PF0225918=FAT=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACTTGGGGAGTGGCAG
R:
CAGTGACCTTCTTCTGCAGAGG
Band lengths:
358-1795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]