BtaINT0097376 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64909377-64910020:+
Coord C1 exon
chr13:64909377-64909726
Coord A exon
chr13:64909727-64909895
Coord C2 exon
chr13:64909896-64910020
Length
169 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGG
5' ss Score
7.86
3' ss Seq
GTGCCCTGTCCTTTCTGCAGAAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
AAAGAAGCTGGCGCTGCGACTGCAGGAGGCAGAGGAGGGGGTTGAGGCCGCTCACGCCAAGTGCTCGTCGCTGGAGAAGGCCAAGCTGCGGCTGCAGACCGAGTCAGAGGACGTGACCCTGGAGCTGGAGCGGGCAACCTCTGCGGCCGCGGCGCTGGACAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGCGGCGGCAGGAGGAGGAGATGCAGCGGGAGCTGGAGGCGGCCCAGAGGGAGGCCCGCAGCCTGGGCACTGAGCTCTTCCGGCTGCGGCACAGCCATGAGGAGGCCCTGGAGGCCCTGGAGACGCTCAGGCGGGAGAACAAGAACCTGCAGG
Seq A exon
GTACGGCCCACCATGGGGTCAGAGCCACCCTGGGGGTCACTGCGAGTTCCCTCCGAGTCACACAGGCAGGGTGCCCTGGCCGGGGCACCCTGGAATTACGAGGGGGTGAAGTGATGTGGCTGCAGCATGAGTGGTGGGGTGGCCCCTCAGTGCCCTGTCCTTTCTGCAG
Seq C2 exon
AAGAGATCAGTGACCTCACAGACCAGGTCGGCCTCAGTGGGAAGAGCGTCCAGGAGCTGGAGAAAGCCAAGAAGGCGCTGGAAGGGGAGAAGAGCGAGCTCCAGGCAGCGCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(33.9=78.8),PF045827=Reo_sigmaC=PU(74.3=88.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(25.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGAAGCAGCGGCACTT
R:
CTGGACGCTCTTCCCACTGAG
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development