RnoINT0096573 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151147241-151147827:+
Coord C1 exon
chr3:151147241-151147590
Coord A exon
chr3:151147591-151147702
Coord C2 exon
chr3:151147703-151147827
Length
112 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GGGCTCTGCTCACCCTGCAGAGG
3' ss Score
6.92
Exon sequences
Seq C1 exon
GAAGAAGCTGGCCCTGAGGCTGCAGGAGGCAGAAGAAGGCGTAGAGGCTGCGAATGCCAAGTGCTCCTCACTGGAGAAGGCCAAGCTGCGGCTGCAGACAGAGTCCGAGGACGTGACCTTGGAGCTGGAGCGGGCCACCTCAGCCGCTGCTGCACTGGATAAGAAGCAGCGGCACTTGGAGCGGGCCCTGGAGGAACGGAGGCGGCAGGAGGAGGAGATGCAGCGGGAACTGGAGGCGGCGCAGAGGGAGGCTCGAGGTCTGGGCACCGAGCTCTTTCGATTGCGGCACAGCCATGAGGAGGCGCTTGAGGCTCTGGAGACACTCAAGCGGGAGAACAAGAATCTGCAGG
Seq A exon
GTAAGACCTGAGGCCCAGAGCTCTCAAGGGTCACCTTGGACTTGGGTGAAGGACGTAACCTGGAGCAGAGCAGAAGTGAGGGTGAGTCCTCAGGGCTCTGCTCACCCTGCAG
Seq C2 exon
AGGAGATCAGCGACCTTACAGACCAGGTCAGCCTCAGCGGGAAGAGCATCCAGGAACTGGAGAAGGCCAAGAAGGCGCTGGAAGGGGAGAAGAGTGAGCTGCAGGCTGCGCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(39.7=78.8),PF045827=Reo_sigmaC=PU(67.8=85.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAGAAGCAGCGGCACTT
R:
CAGTTCCTGGATGCTCTTCCC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]