GgaINT0010726 @ galGal3

Intron Retention

Gene

ENSGALG00000003157 | MYH7B

Description

NA

Coordinates

chr20:2587319-2588090:-

Coord C1 exon

chr20:2587853-2588090

Coord A exon

chr20:2587444-2587852

Coord C2 exon

chr20:2587319-2587443

Length

409 bp

Sequences

Splice sites

5' ss Seq

AGGGTAGGA

5' ss Score

6.45

3' ss Seq

ACACCTTCTGCTCCTGCCAGAGG

3' ss Score

6.92

Exon sequences

Seq C1 exon

CTCTCAGTGGACCTGGAGAGAGCCAACTCTGCCTGTGCTGCCCTGGACAAGAAGCAGCGCAACTTTGACAGGATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAAACTCAGGCAGAGCTGGAGGCATCACAGAAAGAGTCACGCAGCCTGAGCACGGAACTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGACAACCTGGAGACCCTCAAGAGGGAGAACAAGAACCTGCAGG

Seq A exon

GTAGGACTGGGATCGGGCCTTCCCCTCAGACTGCTGGCAGCCTCGGGCCCTGCTGTCACGGGCAGCCCATAGCTCCCATGTCCTCAGCCCTGAGGCAGATGTATGGCAGGATGGGCATCCATCTAGGCAGGGACCACTGTGACCCTTTGACAGGAGGGTCTTTGTGGTTCCTTACATCCCTCCTGTGTGCCCTCTCCTCCCTTTCCTTTGCCCTGGCCACAGGGGAGCACAGCAGGGCCCAGCAAGGGGGGCTGGTGCCCATTTCCCAGGCACAGCCTCAGCACTCAGGCTGCTGCTCCCCCAGGGGCCGGGGGAATGTGGGCTCAGCTTGGGTGGGGTGATGAGTATGTCCTGCATGGGGCTGGCCCTGCAGACCTGCTCCTGCCCAAACACCTTCTGCTCCTGCCAG

Seq C2 exon

AGGAGATTGCTGATCTGACTGACCAGATAAGCATGAGCGGCAAAACCATCCATGAGCTGGAAAAGCTGAAGAAAGCCCTGGAGAATGAGAAGAGCGATATCCAGGCAGCGCTGGAGGAGGCTGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000003157:ENSGALT00000004997:36

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.306 A=NA C2=0.595

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(14.0=100),PF041569=IncA=FE(55.6=100),PF045827=Reo_sigmaC=FE(67.5=100),PF0003816=Filament=FE(59.0=100),PF131661=AAA_13=PU(11.5=28.8)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(7.3=100),PF041569=IncA=PD(27.5=92.9),PF045827=Reo_sigmaC=PD(27.4=76.2),PF0003816=Filament=FE(30.6=100),PF131661=AAA_13=FE(20.5=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000004988