MmuINT0103630 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155456747-155457339:+
Coord C1 exon
chr2:155456747-155457096
Coord A exon
chr2:155457097-155457214
Coord C2 exon
chr2:155457215-155457339
Length
118 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
GTGCTCTGTTCACCCTGCAGAGG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GAAGAAGCTGGCCCTGCGGCTGCAAGAGGCAGAAGAAGGCGTAGAGGCCGCAAATGCCAAATGCTCCTCACTGGAGAAGGCCAAGCTGCGGCTGCAGACAGAGTCGGAGGATGTGACCTTGGAGCTGGAGCGGGCCACCTCGGCCGCCGCAGCCCTGGATAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGAGGCGGCAGGAGGAGGAGATGCAGCGGGAACTCGAGGCGGCACAGAGGGAGGCTCGAGGTCTGGGGACAGAGCTCTTTCGACTGCGACATAGCCACGAGGAAGCGCTTGAGGCTCTGGAGACACTCAAGCGGGAGAACAAGAATCTGCAGG
Seq A exon
GTAGGGCCGTTGGCCCAGAGCACTGAAGGCTCGATCACCCTGGACTTGGGGTGAAGGAAGGGAGCTGGCTCAGAGCAGAGGTGGGGGGCGAGTCCTCAGTGCTCTGTTCACCCTGCAG
Seq C2 exon
AGGAGATCAGTGACCTTACAGACCAGGTCAGCCTCAGCGGGAAGAGCATCCAGGAACTGGAGAAGGCCAAGAAGGCGCTGGAAGGGGAGAAGAGTGAGCTGCAAGCTGCACTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(41.3=78.8),PF045827=Reo_sigmaC=PU(68.2=87.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=FE(27.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAGAAGCAGCGGCACTT
R:
CAGTTCCTGGATGCTCTTCCC
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: