GgaINT0010726 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2945414-2946297:-
Coord C1 exon
chr20:2945948-2946297
Coord A exon
chr20:2945539-2945947
Coord C2 exon
chr20:2945414-2945538
Length
409 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
ACACCTTCTGCTCCTGCCAGAGG
3' ss Score
6.92
Exon sequences
Seq C1 exon
GAAGAAGCTGGCCATTCGGCTGCAGGAAGCGGAAGAGGCTGTGGAGGCTGCCCATGCCAAGTGCTCCTCACTGGAGAAGACCAAGCACAGGCTGCAGACAGAGATCGAGGACCTCTCAGTGGACCTGGAGAGAGCCAACTCTGCCTGTGCTGCCCTGGACAAGAAGCAGCGCAACTTTGACAGGATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAAACTCAGGCAGAGCTGGAGGCATCACAGAAAGAGTCACGCAGCCTGAGCACGGAACTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGACAACCTGGAGACCCTCAAGAGGGAGAACAAGAACCTGCAGG
Seq A exon
GTAGGACTGGGATCGGGCCTTCCCCTCAGACTGCTGGCAGCCTCGGGCCCTGCTGTCACGGGCAGCCCATAGCTCCCATGTCCTCAGCCCTGAGGCAGATGTATGGCAGGATGGGCATCCATCTAGGCAGGGACCACTGTGACCCTTTGACAGGAGGGTCTTTGTGGTTCCTTACATCCCTCCTGTGTGCCCTCTCCTCCCTTTCCTTTGCCCTGGCCACAGGGGAGCACAGCAGGGCCCAGCAAGGGGGGCTGGTGCCCATTTCCCAGGCACAGCCTCAGCACTCAGGCTGCTGCTCCCCCAGGGGCCGGGGGAATGTGGGCTCAGCTTGGGTGGGGTGATGAGTATGTCCTGCATGGGGCTGGCCCTGCAGACCTGCTCCTGACCAAACACCTTCTGCTCCTGCCAG
Seq C2 exon
AGGAGATTGCTGATCTGACTGACCAGATAAGCATGAGCGGCAAAACCATCCATGAGCTGGAAAAGCTGAAGAAAGCCCTGGAGAATGAGAAGAGCGATATCCAGGCAGCGCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(40.2=76.3),PF045827=Reo_sigmaC=PU(76.6=89.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.6=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCAGTGGACCTGGAGAG
R:
GCTGCCTGGATATCGCTCTTC
Band lengths:
348-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]