BtaINT0097643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56554622-56556711:+
Coord C1 exon
chr20:56554622-56554677
Coord A exon
chr20:56554678-56556568
Coord C2 exon
chr20:56556569-56556711
Length
1891 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CTTCTCTCCCCGCCGCTCAGACC
3' ss Score
6.03
Exon sequences
Seq C1 exon
GGCACTTTGGATGTGGGGCTGATCGATTCTGTGTGCGCCTCGGACAGCCCAGATAG
Seq A exon
GTAAGCTCAGGTGTGATGGTTAACAAAAGTACCTGCTCATTACCTGCAGGCACCCACAGGCCTCTATGCTCAGGCTTCATGTTCCCACCTGGTCTGCTCCAGCAATCACGGTCTTCCTCTCTGGGTGTCTTTGGTGTGTGGGGGATCAGAGGTGAGGGAGACCATGGAAACCTAATTTAGACAGTCATAGAGACAAACGGGCTTCCCAGGTGGCCCCGTGGTAAAGAGTCTCCCTGCAGTGCAGGAGATGTGGGTTCAGTCCCTGGGTCGGGAACATCCCCTGGAGAAGGGAATGGCAACCCACTCTAGTATTCTTGCCTGGGAAATCCCATGGACAGAAGAGCCTGTGGTCCTTGGGGTCACAAAAGAGTCGGATACAACTAGGCGATTAAACAATAACAACAAGAAAACTGGGAGAAACTTGGGATTCATTTAATAAGAAAATGCTTGTGTCCCAACACAGGAGTGGGTGAACTTCCCCCTTCTATATTTTAATAATGAACTAGAAAAGGATTTTGATGGAAGGTTATATGTAGAGTATTAATAAATTAAACCACAGTCATTTATTTCCCTTGCCATGCCTTCCTGGCCCGTGCCCTTAAATATAGCATATTTTCAGTTTTGCTTTTTTTGTTTTTGAAGGCAGATCATCTTTGGCAGTCGTCTCAGGGGTCTTTGTACCCAGTGACCATCATCTTTACCGTCTTTATTTTGCTTCCCCACTTAAGAATTCTGAGTATGAGTGGAAATTGACTTCTGCCTTCAATAACATTGCTTTAGAGAGAATAGAAATGAATTCAAATTGACAACAAAAATCATGTCTCCTGGGCCAAATGAGAGTTCTGAGGTGTCCGTCACTCAGCGTTCACGAAGGCTTTTCTGAACTGTATTCTTTGTTTCTACTAGTCACCCTGCACCTCCCCATACCTGGCTCAGGAACGTGAACACGTGCATGTCACGTCAGTCATCGAAGCCCAGGTCCTGATTCTGACGGTCACGTTCCTGCCTGCATCTCTCTTCCTTTAAACCCCTTCCTCTGGCACGTTGGGCATGTGATGATCCACGGGAGAAATTTCCATCCCTACCTTGCTTTTCCCTTTTCCCCAAGTGCTCACCTTTCTCCTTTCCCGACTCTAGAAAAATCTTGTTTTTTAAGGACCATCTGTCTGTCCATACTATAGTCCTGTTCCTCTTTCTTTTCCTTGAATTTTTGCAGCACTTAGCTTCAGCAAACATGTGAAAAGTTCCAAAATACTGTTCATAGTCCCTAGCTCCAGTAATTAAGAATTAATAGAAGCAAGGTCCTATGAGAGATTCAGGGCATTGCCAGATAAAAAGATGCAGGAGGAAGTAAATTTCCATTATTAATTTATCTCTGCCTGGAAAAGACCCCCTTGTCAGCTCACACTGAGGTCATGGATCCAGGTGGCGCTCTGTTCCAGGCATAGTCAAGTGTATAAGATGTTCCACTTACAGCTGTTTACTGATCTTCTGTTACTGGTGTATGACATTCCATTACCGACCCACAGAAATATTATCCAAGGCAGGAAGAAATTTACTTTGGAGAGGCATCCAAAAAAAATCTTTCCCCCACGGTCACCTTGGTTAGCCTGCCCGGAACCGAATTTCGTCTGGAAAGTTTTGCGAGAAGAAATGTTTTTCCTTCCAGGACCTTTCAGAATGTGTTGCTCCAAGTGTAAAGGTTAATGAGGCATGAAACAAATCCTGCAGAAATGAGTGAGGTTTGCCTCAGCAGAAAATACAAATAGCACTGCCATTTTTCTCCCCATGATCCGTAAGCCAGGAAAAAGACGTTCAGTCTCGGTTCACACGGAGGTGACGGTTTCAGTGGAGCTAAGCGGTTTTGCTTCCTTCTCTCCCCGCCGCTCAG
Seq C2 exon
ACCTAACTCATTCGTGATCATCACGGCCAACCGGGTGCTTCACTGCAACGCCGACACGCCGGAGGAAATGCACCACTGGATAACGCTGCTGCAGAGATCCAAGGGCGATACCAGAGTGGAGGGCCAGGAGTTCATAGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.0=100)
A:
NA
C2:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTTGGATGTGGGGC
R:
TCTCACTATGAACTCCTGGCCC
Band lengths:
198-2089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]