RnoINT0096760 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78055265-78057289:+
Coord C1 exon
chr2:78055265-78055320
Coord A exon
chr2:78055321-78057146
Coord C2 exon
chr2:78057147-78057289
Length
1826 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CGCCCCGTCTCCTCTCTCAGACC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGCACACTGGATGTGGGGCTGATTGATTCTGTATGCGCCTCTGACAGCCCAGATAG
Seq A exon
GTAAGCTCCAATGTGGCTCTTGAAAGACATCATCTGCACGTCCTCATGGGTAGCCTCTGGCCTTGCCAGTGAGCCCTTTGCTCAGCTGTGTATGGAGCCTTGGCAGCCACCTCATCTAAAGTCTTCTAGAAGACTGACTTTGGGTTGCTAAGGTAAAAGAGAAGCCAGACCTTCACAGTCCATTTTCATATACTGCCACACAGGAAGGAGCCCTCCTGTCTCAGCCTCTCAAGTTCTAGCACCCAGTGTGTGAACAACCATATCTAACAGTCTTGGAATTCTCATGGCAAGAGAATGGCCGTTTGGGACAATGGTATCCCAGCGTAGGGAGTCTATAGCATTGCTTTCCCTAAATATTAATAATGACCTGACAATAGCATGCATGGGAAACAGATATAATAGATATAAATACAGCCATGAGCCCTGACCTTGATATATCCAGTGACCTTAAAGGCAAACCATCTTCAGATTGCCTTCATTGAGTGTCTGTTTTTTTTTTTTGGTCCTTGGCTAACTTAGTCGTCCTAGGGGCAGAGTCAGAATTAAAAACTGACTTTTGCCAATGCTGGTAATAGCCAGAAGGTAAACATGAGTGTGTTAAGCCTTATATAAATAGTAATTTTTTTTTTTAAAGTCTACTAGGCAAAGTAAGAGCCCTAGGGTCCCCATTATGTACTCTGGGGCTGTTGGGAGATGAGAATCTTTTGCCTCCAGAAGTCAGCCAACGCCATTTAACACCTGTGCTGTCAGTCGCCAAGGGCCAGAGTCTGTGTTTACTTAGGTTCTGCCTTACTAAGCCTGCTGCTTTTCACAAGCTCCACCCCAGCAGGCCTGGCCCACACCAAAACCTTTGCATTCTGCTGTTTGATTTTTTCCTACCTTTCTTCCTTCCCAGCTATGGTTTTTTTATTTGTTGGTTTGTTTTGGTTAGGTTTTTTTCAAAACCAAGTTTTTTCTGTGTGTTCCTGCCTGTCCTGGAACTGGCTTTGTAGAGCAGCCTGTCCTTAGACTCACAGAAATACAGCTGCCTCTGCCTCCTGCGTGCTGGGACTAAAAGCATAGGCCAGGCCTGGCTGAGCTACAACTTTTAAGGACCTCTGACTACACAGACAGGCAGTCCACCTAACCCTTTCTTTCTTGAACTCCAGTAATGCTTTGCTTCAGGGAACATTTGAAAGCTCACAAGGAAGAGTTCCCAGTCAGTAGTGTAAGCAGGTAGATAAGGAGGTGGTGTGCGCACAGTCCCGTGAGGACTTCTGAAGGGTGACAGACAGGAGCGGCAGGACAAAGTAAGTTTCCATTATCACTTTATCCCCATCTGGGAAATGAGCCCTTGCTGAGTGGCTTTGAAGACATGGGCACAAGCTGCTTTTTCTACCAGGGACAATCAAGGGCATAACATGTTCCATTGGCACCCACTTGCTAATCCTCTGTTACCACTGTCTGGTATTTCATTCGCAACTCACAGCAATATTATCCAAGGCTATATCCAGAATTAGGAAGAAATGGGTTTGAAGATGCTTTTATTTAAAAAAAAAATTATTTTGGCTTTCCGGGACTAGTTTCTTCTGGAAAGTCTTGTGGAAGGAATGGTTTCCCTCTCAGGCATTTTCTGGATGAATGTGTTGCTCCGAGTATAAAGGTTAATGATGCATAAAATGAATGCCACAGAAATATGAGCAAGGTTTGCCTTAGTGTGAAATATAAATAGCATTCCAGTGTCTCCTGGGGATCCCTGCGCTGCCAGGGACAGGGCCATGAAGCCTTGCTGCAGACAGGTGGTGCTCACACTGGGTCTCCCTCTCTCGCCCCGTCTCCTCTCTCAG
Seq C2 exon
ACCCAACTCATTCGTGATCATCACGGCCAACCGGGTGCTGCACTGCAACGCAGACACACCAGAGGAGATGCACCACTGGATAACACTGCTGCAGAGATCCAAGGGGGACACCAGGGTGGAGGGCCAGGAGTTCATCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.0=100)
A:
NA
C2:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGATGTGGGGCTGATTG
R:
CTCTGACGATGAACTCCTGGC
Band lengths:
195-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]