MmuINT0103883 @ mm9
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25726954-25729308:+
Coord C1 exon
chr15:25726954-25727009
Coord A exon
chr15:25727010-25729165
Coord C2 exon
chr15:25729166-25729308
Length
2156 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CATCCCGTCTCCTCTCTCAGACC
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGCACACTGGATGTCGGGCTGATTGATTCTGTATGCGCCTCTGACAGCCCTGATAG
Seq A exon
GTAAGCTCCAATATGGCACTTCAAAGAGAGAACATGGTGGCCTCTGGCCTTGCCACTGCCCCCTTCTCTAGGCTATGTATGAAGCCCTGGCAACCACCTCATCTAACGTCCTCTAGCAGGCTGACTTTGGCTTGCTAAGGTAAATGAGAAGCCAGACTTTAACCATCCATTTGCAAACGCTGCAAAGCAGAAGGGGGTGGTTTCTGTGTGGACGATCTGCTTGGGATAGCTTTTCTTCTTGTGTTTTATTTTTTGAGACTACGTTCGTCCAGACTGGTGTCAAAGTTTGGACAGTCTTCTCCTGTCTCCGCCTCTCAAGTTCTAGGACCCAGTGTGTGAACCACCACATCTGACTGTCTTGGAATTCTTATAGCAAGAAAATGGCTGTTTAGGAAAATGGTATTCCAGCATAGGGAGCCTATAGCATTTCCTTTCCTTAAAAATTAATAATGACCTGATGATAGTGTCATGGCAGATAGATATAATAAATATAAATACAAGCATGAGCCCTGTCCTTGACATTTCTACTTTGACCTAAAGGGCAAAGCATCGTCAGATACCTTTGTTGTCTGTCCGTTTTTGAGTCAGTCCTTGGCTGACTCAGTTGTCCGAGGGGCAGAGTCCAAATTAAAACTGACTTTTGCCATTGCTAAGATAGCCAGAGGTAAATAAGAGTGTGGTAAGCCTTATAATAAGTAATAGTAATATTTTTTTAAAGTCTGCTAGGCAAAGTAAGAGCTCCAGGGTCCTCCCCGTTATGTACTCTGGGGCTGCTGGGGGATGGGAAGCCTTTGTCTCTGTCAGCCAACACCATTTAACACCTGTGCTGTCAGTCACCAGGGTCCAGATGCTGTGCTTACCTAAGTTCTCCCTCACTGAGCCTGCTTCTTTTCACAAACTCTCTGCCCCAGCCTGGCCATACCTTTGCATTATACTATTTGGTTTTTCTCACCTTTCTTCCTTCTCAGCTACAGTTTTTTGTTTGTTTTGGTTTGGTTTTTGTGGTTTGATTTGGCTTGGTTTGGTTTTTATTTCTTTTTCTTTTTTTTTAAAGATTTATTTATTTATTTTATGTATGTGAATACACTACACTATCATTCTTCAGACACACCAGAAGAGAGCATCAGATCCCATTACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGGACTCTGGACCTCTGAAAGAATAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTGGTTAGGTTTTTCAAGACAAGGTTTCTCTGTGTATCCCTGCCTGTCCTGGAACTGGCTTTGTAGACCAGCCTCACCTCAGACTCACAGAAACACGACTGTCTCTGCCTCCTGAGTGCTGGGATTAAAAGCATATGCCACCACCTCCTGGCTCAGCCCCAGTTGTTAAGGGACCTCTGGCTACAGACAGGTAGCCCACTTAGCCTTTGCTTTCTTTGCTACAGGGAACATTTGAAAGCTCACAAGAGAGTTCCCAGTCAGTATTAGATAGATAAGATAGACAGTGGGTAGATAAGGAACCAGTATGCACACAGTCCCTTGAAGGGTTCTGAACACTGACAGACAGGAGCTTCAGGGCAAAGTAACTTTCCATTATCACTTTATCCCCATCTGGGAAATGAGCCCTTGCTGAGTGCCTTTGAAAATGTGGACACAGTAGCTTTTAGTACCGGGGACAATCAAGGGTATAACATGTTCCACTGACACCTACTTGCTAATCCTTCTCTGTTACCACTGTCTGGTATTTCATTCGCAACTCATAGCAATATTATCCAAAGCTATATCCAGAGTTAGGAAGAAATGAGTTTGGAGGTGCATTTAAAAAAAAAAAAAATCCCCATGGTTACCTTATTTGCCTTCCGGGGACTAGTTCCTTCTGGAAAGTCTTGCGGATGGAATGGTTCCCCTCTCAGGCATTTTTGGGATGAATGTGTTGCTCCAAGTGTAAAGGTTAATGACACATAAAATTATTGCCACAGAAATATGAGCAAGGTTTGCTGTAATGTGAAATATAAATAGCATTCCAGTGTCTCCGGGGAGCCCTGGGCTGCCAGGGACAAGGCTGTGAAGCCTGGCTGCAGACAGGTGATGCCCACCCTGGGTCTCAGAGCTAATTCCTCTCTCATCCCGTCTCCTCTCTCAG
Seq C2 exon
ACCCAACTCATTTGTGATCATCACAGCCAACCGGGTGCTGCACTGTAACGCGGACACCCCAGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGATCCAAGGGGGACACCAGGGTGGAGGGCCAGGAGTTCATCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-Myo10:NM_019472:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.0=100)
A:
NA
C2:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: