GgaINT1018606 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75619241-75622366:+
Coord C1 exon
chr2:75619241-75619296
Coord A exon
chr2:75619297-75622223
Coord C2 exon
chr2:75622224-75622366
Length
2927 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATCTTTGTTTATTTTTATAGACC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGTACACTCGATGTAGGATTGATTGATTCTGTCTGTGCCGCTGATAATCCAGATAG
Seq A exon
GTAAGTAAGTCAGAACCATGCCTAGTAACTTTCTTTCTTCTTCTCCTTTCTCTGGTCAAAATCAGCTGCTTTATACTTTAGTCTACATGCTGACCAAGCATGCATTAAAGTGATTCCTTACTGTCTACCTTTTGACAGTGTCAAACACTGTGTTGAAACAGGAAAGGTAAGAATGGTGTTTTATGTGGGGGCTTCGCTAACTTCACTGGCATTGCTCCACGTGTTCAGCAGTTTTGCTACCAAGGTGGTCCAAAAGCAGAGGATTAAGTATTTCTTTCACTTAGACAAGTAACACAGCTAAAAAAGAAAAGCATATTTTTGAGTCCTTGCATAGAATCACAAGGTTGGAAAGGACCTACGAGATCATCTAGTCTAATCATCCTCCCATTGCCCTTGCTACCACAAACCACTAAACCATATCTCATAGCTCCTCATCCAGACACCTCTTGAACACCGCCTGGGACGGCATCTCCACCACCTCCCTGGGCAGGCCATTCCAGCGCCTGACCACTCTCTGAGAGAAAAAGTTTTACCTTATGTCTAACCTAAACCTCCTCTGGTACAACTTGTGGCCATTTCCTTGGGTCCCGTTTGTTGCCTGGGAGAAGAGGCCAAACCCCTCCTCATCACAACCTCCTTTCAGGAAGTTGTAGAGTGCAGTGAGGTCTCCCCTGAGCCTCCTCTTCTCCAGACTAAACAATAGCAATGAGGTAGGCAGAAAATTCTTTTTAATGTTTTGTAGTTTATCTTCCTTTGCAAGAATGTTGTATTCTACATGGATGATAACAATTTCTTAGAATGAGATTGTCTTTTATAACAAGCAAGCATTAGAAAACAGACAAACTGAAAAAAAAAACCAAACCAAACAAGGGAATTCTTAGTTCTCAAACTAGCAACTGAGGGATAAAAAGTAACCTGAGTTCATGGTCTGGCTTGGGTTACAGGATTACTGGCTATGAGGTATATTACTTGCATTGTAACAGTTCATTCCAGTCCTCTCATTGCGAATGTGTGAAACAGCTGGCTTTAAGTTACTGGTTTCTCCTTGGCTTACCACGATCCGGATACTATGAGTAACTGTGATACAATCACAGCCCAGGCTTCCTAAATCATAGAACACACACGTCCAAAGCTTTCAAAATGTTTTTAGTGAGGCATGTCTCACAGTTTTGTTTTTTATTGTATTTATTTATTTATTTCGTTCTCTGAGTCTAAGAATGTAAATCAGGGATGGAAGGGTTTTCAATTAGGAAATTAATTTGACGGATGTAGGCAATAAAGTATTTCTGTCTTGACTAATATGAAACCAGTGGTGCAGCTAAAAAGAGAGAAGCTGAGCAAGGAGCTCTTTGAATCCATATTCAGAAGGAATCCCCGAAATAGGGCTTCTGTCATTTTCCTAAAGTGGGGAAAAGGGGACCCTGGAAGGTTGGCTACTGTTGGTTGTAACCTCGTTTGATAGCTTGATCTACTTTACTTTATACCATAGCTCTATCATTTTTCATGTCTCTTGCTATTGCTTCTCTTTTGGAATCACATTACACAGCCTTCTAGAGTGTGCTTCACATAGCTCAGTCTAAAGCTGACTCCTCCTCAATGATCAGCAAAATTACTCTGTTCAGTTCACATCTCTGTGTGTTTCCTCATCCACCGCTTCTGAATAATTTAGCACTGCAGCACCAAAGTGACTGTGACCAAAACATTAAGTTCTGATCTCTCCTTACCCACTTCTGTCACATTGCTGAGTGCTACCCACAGACAGCATGTTTTCTCTGGCTTTATTGTATATTAAATATTAAATACTACTAAAGTATTCAAAGATATTTCTTCTTTCTATTTTTCTGTATTTGCATAATTATAACTTCTTTACACACATTCCACATTACTTCATTTACTGTAATCTGTCTTCAACCAGTATTCTAATTTTACCTCCTGATTATTTTATTTACTTCATGCTGACCTCCATCTGGCTTTAAACAGCACGTACTGGTTTTGGACAATGCCATCGTACTTAGGTGAACCAATCCCACAAACAATTCTAATTGGTTCTAAATTCTACCCAATTGCCTTCTCACCAGAACAGTAAAATGAAGATCTATGACTTTCTTGTGCATGGGGCAGCCCAGACTGCATCGTTCCCATTTTCTACGTCTGATACAGCTCTTAGGAAGTGGATGGATGCGGTCCTGGGCACATCCCATCCTGGGATGGATGTGGTCCTGCTCTGGATGTCCCTGCCTGAGCAGAGCGGTTGGACCAAGTGACCTCCAAAGGTCTCTTCCAACCTCTGTGTTCCAGGATGAAAAGAATTGATGGTAAAGGGCTAAAGCAGGTGTTTGTAGGCTGAAAAACCTGCCCCTCTAATCCAGAGAGCCATCAGCACAGTTTGCTCGGGCTCGTTCTTCATGCTTCACTGAATCCCGTGTAGGGTTGAATAAAAGCCAAACTCTCATTAAAAATAGATTGTACTGTCTGCAAATTGGGTTGCGCTGCATTAAAAATAAAAGAGTCCGTGTTCGCATGCTGTTTCACTGTGGAGCTTAATAAACTGCAGTTGGTTTTGGCTAATGGAACTACTGAAGCAGACACTCTAAATAAATCTGACCCTGAAATAAAGTTCTGATTACGATCAAAAGCTGATGAAAGATCGGGGGTTTGCTCAGAATGGATTTGAGATACGACAAGTTGCAGTTTAATTTAAACTCTTCCACCACGCAGAGCCCTGGCACTTCGGTGTGAATCTGAAGTAATTCTGTCTTTTTAAATGCATGATATTTTTAGCCGTAGTAGTGTTGAAATAAATGTTACAGAGATGGACGGTATGTACCTGAATGCAGAATGCAAACGGTGAGTAGTGTTTATGCTGACAGTGAGTTAAACAGTACACTGACTGTAAAGGTGTTATCGATCTTTGTTTATTTTTATAG
Seq C2 exon
ACCCAACTCCTTTGTGATTATTACTGCTAATCGTGTTCTGCACTGTAATGCTGACACACCTGAAGAGATGCATCACTGGATAACTCTGCTGCAGAGGTCAAAGGGGGACACAAGAGTGGAAGGACAAGAATTCATTGTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.0=100)
A:
NA
C2:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]