DreINT0100280 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42771913-42773435:-
Coord C1 exon
chr2:42773380-42773435
Coord A exon
chr2:42772056-42773379
Coord C2 exon
chr2:42771913-42772055
Length
1324 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTGTGTTTATCTCTCTGCAGGCC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GGAACTTTGGATGTAGGAATGATTGATTCTGTATGTGCCTCTGACAACCCAGAAAG
Seq A exon
GTAAAAACTGTTTAAATAAAAAGATTTGTACGTGTGTGTGCGTGTGTGTTTGTATATGAGCTATTTCACACGAGTAGCAGTGTGATTTGGCTGTATATGGGCACTGGTGGGAGGCGTGCATTGGCTTGAGGCTGCAGGCCGAGTGCCTTAGTGTCCCACCAGTGCTGATATACAGCCATATTGCACTGCTACTCGTGTGATACTGCATTTATACAACAGTTCCATGGCATAATCATGTATATAAAAAAGAAAATCAAACACAGAGAGTCTCAAAAGCTGACGTCAGAACAACAGAAACTGTTGCTTAAAAGCACGTCACTTTAGAGCTAGTATTTGAATGATTCTCTAGCATAATCTCTAAAGTGAAGACAAAACGGGTGATTTTGCTGACATTTTAAGATTATAAGGCTGAACGGCATGAGATGACATCAGTCTAGAGACATTTCCTAGATTTTCTCTGTTGCAATCAGGATATCACATTAATTATCCCCGAAAAAGCCAAAGCAAAGCAAACACTAGCAGATTACTATAAATACAGCACTACGACATATACAAGAGTGATCGACTTAGAATGCCTTTTACCTAACCATTTGTTCAGCTGTTGTTTGAAACTTGCACTGAGGAAATGTTGTCTTTCTCCCCTAAGGACTTATGCGGTCTCTGTCGCCATCTTGTGGCAGAACATCAACTGTTTTTGTTCTGCTCAGTATGACAGGCTAATGGCCGTCAATGCGAAAATTTAAAATAGACACTGTCCTCATAAACAAACTGCATAGTTGCAATCTAAACAACTACATTCTCACCCACCTAAAAAAGGCTCAAAACTACATTGTTGTCGAACAGCTGCAATATTTGTCAAACTGTTGTGAGTTTATTGATCTGCTGTCACTCTATGTGGGCGGAGTAATACACAAGAGGGAAGAGGCTGTACCAATTCTGATATTGCAGAATATCTCTCGGCTATCTGCCAATTAGATTCGAGAACCAGACAGAACTGTTGTATATATAGTGTTTTCTTTTTTTTAAGCTCCATTTTATATTGCTAAATAAAGGGGATTAAAAAATATATTTTTATTTTATTATTTTTTTGGTTGTAATTTTTATTTCTTTTATGGTTTTGTCATTAATTGCTTTTTTAATGCACTTTAAATAAAGTTATTTTGAATTATTTTGGATTTAACTATAGTTATTTTGGATTAAGACATCTACTAAAGTTTCAACCTAATCTTACAGGGTGTTTTTTTACTCTGGGAAAAACAATAGTGTTCTATTATCAGGTACAGATAATAAAATGTTTTAAATGTTTGTGTTTATCTCTCTGCAG
Seq C2 exon
GCCGAATGCCTTTGTTATAATCACAGCCCATCGTGTGCTGCATTGCATGGCTGAATCAGCTGAAGAAATGCATCACTGGATCACGCTGCTCCAGCGAACGAAAGGAGACACGCGTGTGCAGGGACAAGAGTTCATCATCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.4=100)
A:
NA
C2:
PF0016924=PH=PD(47.9=69.4),PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTTGGATGTAGGAATGATTGA
R:
CCCTGATGATGAACTCTTGTCCC
Band lengths:
199-1523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]