HsaINT0108179 @ hg38
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16681871-16683935:-
Coord C1 exon
chr5:16683880-16683935
Coord A exon
chr5:16682014-16683879
Coord C2 exon
chr5:16681871-16682013
Length
1866 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CTTCTCATCTTGTGGCTCAGACC
3' ss Score
5.81
Exon sequences
Seq C1 exon
GGCACCTTGGATGTGGGGCTGATTGATTCTGTGTGTGCCTCTGACAGCCCTGATAG
Seq A exon
GTAAGCTCAGATGTGGCTCTTAACAAAAACAGCTCATCACCTGTGTGTGTCCACAGGTGTCTGTGCTGCTGGGTCACGACCCTCTTCACAGGGCTGTGAAATCACGCAAGGCTGTGTGTTCCCACCTTGTCAACCCCAGCAATCCAGTCTTCCTTCTTGGTACCCAATTTTACATCACCTGGAAGTCTCCTTCTCTGGGTATCTTTGGAGTCCTGGGGAAAACCGTGGGAACCTGGACAATTTTAAAAAGCATGAGGAATATTTTTAATGTGTATACAGGGACAAACTTGGGATTTATACAGGAAGAAAATGCCTGTTTAGGAAAATGATATTCCAGCAAAGGGGAAGGGAGTCATTCTCCTTTCTGAACTTAACGATAAACTTGAAAAGGATTTTGATGATAATGTATATGTAGAGTATTAATAAACCACAAACATTGATTTTCCTTGACATTTCTTCTTTCTTGGCACCCTTTTTGGTTTTGATTTTTGAAGGCAAATCATCTTTGGAGATGATCTTACGCGTCTTTGTGCCCAGTGAACTTCATCTTTATTGTCTCTGTTTTTCTGTATTATCTTGTAAGTTCTACTTCTGGCCTGCAGCAGAATTTAAGAAAAGTTTCTCTAGGACGGACCAGAGAAAGAATCAAAATTGTCTTCTGCCCTCAGTAAGATGCTGGAAAGTGAATACGAGTGTGTTAAAATTGACAACAAAATATAGTGCCTCCTTGGCAGAGTTAGAGTGCTGGGGTCTCTGTCAGTCACCCTCCCGTTGACAAGAGCCCTTCTGAACCATGGGTCCTTTGTTTTTAGTAGTCAGCTTGCACCCCTTATAACTGGCTCAGGAATCTTTAACACGTATGTGTCATATCCGTAATCAAAGCCCTGGTGCTTCTTATTCTGGTATGTGAGTTTCTACCTTACCTTCTCCACATCTTTACTCTCCCAAGCCCTTCACTCCTCCAGGCTGGGCATGTGATGATCCATCCTTAGAATTTTGCATCCTCATTCAGGGTTTTCTCTCTTCCTCAACTGGCCACTTTTCTCCCTTGCCAACTATAGAAAAAGGCTTTTTTTATTTTTTATTTTTAAGGGGCACCTCAAGTTTAGCCTGTTTGCATAGCTTTTCCTGTGTCCTGCAGTCCAGTTACTCTTTTTCTTAAATTTTTGTGTCACCTAACTACAGTGAACATTTGAAGACTTGCAAGAAAGAGTTCACATTCTCTAGCTTAAGCCGTTAGATAGAGGAGTTAGTATTTATATTAGCAAGGGCCTATGAGAGAGGTTCAGGGCATTTCCAGACAAAAAGAGGTGAGGGAGAAAGTAAATTTCCATTATCACGTTATCCGTGACTAGGAAATGCACCCTTGTTAGATCACTTTGGAAACCCGGACCCAGGTGGCTTTTTGTATAAAGCGTAATCAAGCATTTAAGATGCTCCACCTACACCTATTTACTGATCCTCTTTTATTGCTGGTGTCTGACATTTCATTACCAACCCACAGAAATATTACCCAAGGCAGGAAGAAATTGACTTTGGAGAGGCATCAAAAAAAAATTTTCCCTCATGGTCACCTTGTTTAGCCTTCCCGGAACTGAGTTTCATCTGGAAAGTTTTGCATGAAGAAATGTTTTCCCTTCCAGGACCTTCAGAATGAATGTGTTGCTCCAAGTTTAAAGGTTAATGATGCGTAAAAGAAATTCTGCAGAAATGAGCAACGTTTGCCTTAATAAAAGCACAGATAGCCTAGCAGTGTATATCCCGTGACCCAGAAGCCAGGAAGAAGGCACTGAGTCTCGGTTCACACAGAGGTGATGCTGACGGTAGGGCTAAGGGGCTTTGTTTCCTTCTCATCTTGTGGCTCAG
Seq C2 exon
ACCCAACTCGTTTGTGATCATCACGGCCAACCGGGTGCTGCACTGCAACGCCGACACGCCGGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGGTCCAAAGGGGACACCAGAGTGGAGGGCCAGGAATTCATCGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555:ENST00000513610:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(3.8=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTGGATGTGGGGC
R:
CTCTCACGATGAATTCCTGGCC
Band lengths:
198-2064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development