BtaINT0098262 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57332143-57336500:+
Coord C1 exon
chr15:57332143-57332271
Coord A exon
chr15:57332272-57336347
Coord C2 exon
chr15:57336348-57336500
Length
4076 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCCACTGGGCATCTCCGCAGGAA
3' ss Score
6.64
Exon sequences
Seq C1 exon
CTCTCTCACCCACAGGGCGACTACGTCTGGATGGACCTGAGATCCGGACAGGAGTTTGATGTGCCCATTGGAGCGGTGGTGAAGCTCTGTGATTCTGGGCAGATCCAGGTGGTGGACGATGAAGGCAAT
Seq A exon
GTGAGTAGCCTGTTACCATCCCGCCCCTGTGCCTGGACAGGGGCACAGGCTGGCAGTGACCTGACACAGGTACCTAGCAGGGACCGGCCTCAGGGGGGGTGGAGACAATTCCTGGGCCCCACTTCTGCCTCTCAGAGCTCCCTTACTCCATGGAGCTTTCCCGACGGCCCCCATGAGAAGGAACCTCGCTTTTGCCCCATGATACTTGTTCTAATTTCCATAAATACTTCGGTCCATTCTGCCTGGTATTAGAGATGTGTGTCTGTGTGGATGTGCGAGTGTATATGGTGGGGGCAGGGAGGTGGCACTAGCCTGGGCGCTCCTTGGGTTCACGGATGCTTTGGGATCAGAGAGACTGGATTCAAATCCCATCCTGCCCACTTGATGCCCAAGCTATGCAACCTTGGCCAAATCTCTTTCCCTTCTGAACCCGTTTCCCTTTCTATAAAATGGAGATAACGACAACTATCTCACAGGGTTATTGACTCAGAAAATGGGGAGGTGCTCTGAAAACAGCCAGTCTGGTTCTGTGGGGTTACAGCATCAGATGAATCCACTGTCCACCCCAGTGCTGCCCGGGAATCAGTCTAACAGTTGAACCCTTTATCTCTCGTGACTCTGACGGAAAGGGACACTGGAATTGTAAATTTCAGAGGCAGTGAGAGTGGGGCCTTGGGGATGGAAGGAAAGGTCTAAAGTCAGGGTCCAGTCTTAGAGAAGATGGGTGGGTAGCCTGGAAGAGGGGAAGCCTGGGAACTCTGGACGTGTGTTCATGGGCATGGCACATGTGTATGTGGCGGGGGCATGTGTAAATGTGGTGTGGAGTATAAGGCTGTGGTTTGGTAGAGACGTGAGGGACCGGGGAGATTCAGTTCACCATAATTTGGGTTGTACCCAATGCTTTGGGTGGTGCTGGGGATATAGAGAGAGTCCTGTCTTAGCCTCCAAGTCTGATGGAAGTGAAAGGGTGCAGTGACTTGGAGAAGAAGGCTCTGTTGGGGGTTGGGATGGGCTCTGGATCCTGGAGGCCCAGTACTGGCTGTGGAAAGGTGGGGGCATCACTGTTATTTATCCCTGCAGCCTCCAGAGGTACCAGCTTTGGGGTTTGCAAAGCCCTTTGACGCAAGTTCTGTTTTTAAGTCCTCGCAGTGTATGTGAAGGGCAGGGAGGACAGCCTCTGTGACCTCAAGGGGAAACTGGAGTCCAGGGAGGGACCCCAGGACCACTCACACTAGTGAGCTAGTGAGGGATGCTGCGTGAGGGGCCAGGATCCCGGGCCTCCGGCCCCGTGTGTGTGATTCCTCTCCTGACATCTCAGTGGTGACTTTGGAGCTCCGGTTCTGTTAACCACACTTTTGTCCCCTGGGCTTTAAAAGCAGAGTGCCACAGTGTCATCCCACAGGCTCCAGTTCCAGGGCCCTCTAGGAAGCCCCTGTGAGGTTGCAGGTGCAGAACGGGGGCCCGGGTTTGGCTGGCAGCACAGATAGGTCCAGGAACCAGCCTGGAACCCCCAGGGTGGGGCCCAGGGACTCTGCCTGCAGGCTTGAGTTTCACCTGGGTCATGTTGCATGTCAGATGGTGTCCCGTAACTGTCACCAGATCCCAGAGATCCACTCCCACTCGCTCCCACAGAGGCCCTGAGAATGGGGGCTGCAGAGTGGGGAGGAATGTGACTGACTGGCTGGGAACAGGATGGGGCCTGCGTTGCTTCGGTGGTGCTGGGCCCGGGCGGGTGGAGGGGTGGTGGTTTCTGGCCTCTTCTTTCACCAGCTTTTTCCACTCCCATTCCCTCCCTGCTCCACCTCCAAGCTATCATCGTTGACTTCTCTGTCTGCCACAGACTCCCCCAACCTGAGGCCAGGTGAGTCACATCTGGTTCCCTGGAGCACGATGAAGCTCTCCCTAGAGAAGTTTCTCTATGAAGATGTGCTGAATCAATGAGAGGCCACGGTTCCCATCTTCACTGAAGTGCTAATATTCTGCTTTTGTCCAAGCCATTCTTATTGCTGGACATCCCCTTCTTCCCCTCCTCTGCAGAGCACATGGTCCCTGTCTCTCTGAATTCATTGCCAGGTCAGCTCTTTCCCAAATGTGTCCCCAGGCCCTCTGTGTCTCTCCCTGGTATACCTTCAGGGCCAGGCCTCAGTTTCTGTCCTGGTTACACTTTGGTCTGTGTGGTAGCTGTCTGTGGACATTGACCTGAGGGGTGCTGACCTCAGCTGTGTGACTCTCCATGCAGGAAAGAAGTGGGGAGAGGCTCAGCTCTGCCATTTAACTGAGCAGAGCACTCTACCTCTCCAGTGTACAGCCTCACTGTAAAACAGGGCCAGTAATTCCATGATGCAATGTTAAGAGGAACAAATGAGAATATACACCTCTTTTGCAACAAAAACTAGAAGGCATTAGAGTGATAATACCCAGGATTGGTTGAGCAGTTACCAGGTACTAGGGCTTTTTAGATCTGACAGGAGTGAAACAAAAGTTGACCATTATCATATCTATTAACCCTCCCAACATCCCTAAGAAAAGGGGATTGTTATTCTCATCCCCATTTCGTAGATGAGGTCGTAGAGGTTCAGGGAAGCAAACTGACATGCACAGGGCTACGGGTCTTGCGGAGGCTGAGCTACCTCTTAACTCTGGGCTGAAGTGTCCTGTGGAGGAATTATGGAAACAGGCTGGGGTCGAGTGGGGAAGGCAGACAGCCTGCCTGGCAAGGTTTCCCCTCTGGCCCATGCTAGGGCCTAGGACCAAGTAGGGAAAGGGAATTTTCCAATTGGATCAACTTTTATCAAGAAATGGGATGGAAGAGAGGAATGTTCCACCTGGGATTGGAAAGTCTAGGAGGGTTCTCTGATCTCGCCATCCAGCCTATTCACGTCAGGGCTGTGTGAGGGCCTGACCTGGAATGCAATGCCCCTGGCCCAGGAAGTGCCTTGAAATGCCAGGGAAACTGGAGTCATTGGCAATGGCTAGCCTGTCCTTGAGCTCTTTGAGGGCCTTGGTCTTCTGATCCTGTTTTCTCATGTAAAGTAAGGGAGCTGGAATAGGGGACTTGTGGGCTCTCTCCATGACTAGGACTTGGCTTTTAATTCAGATTTGGTTCCTAGTAGTCAGAAGTCAGCCATCTGTTCATCAGGAATTCTCTGCCCTGTCTTTGTGTCTGGCCCCTGTTTGAAGCACTGTGAACCAGGCTATAGCAAACATGGAACCTAACCGCCCAGACTTGGGGAAAATTGAGGGGTCAGGGCCAGAACCGTGTTCACACAATGGTAACCCAGTGTGACCACTGCCTTGCAGTGGGATACCCGGGGTGTGGGGGTGCCTAGAGGAGGCCCTGACCCAGCCGTGGGAACCCTGACTCCTGCCTGGTCCTCAGGCTCCTATGGTTCTGGTATTTGGGAATAGGGAGAGGGACCCAGAGGTCTTTGGAGGTTTGACTCAGGTTATAGCCATACTACAGAGCACAGGAGCGATTCCCATTTCTCTGAGAGGTGAGGATTGTGAGTAGAGGGTGCTGGAGACCTCCATGGGGAGGTGAGGATTCCAACAGTCAGAGGAAACCAGGGCTTTGCAAGCTCTATGAACAAGCCAAGGCAATTGCCCAGATGTGCAACCATCTGCCACCCCATGGCAGCAGGAGATAGTGCAGTAGTATTGCACTATCCGAGTAACTTTTTGTACTACTGTTTACTGGAGTTTGGATTTGAGGTCAAGTCTAACTCCAATTATTACACTTTTCACTCCATCCTATAAACTGACTGGAGGGACTAATCCCTTTTATGACGGCCACAAGGTAGGGCCAAAGTCCCTGCCGTGCCCACCTCTAAGGTCTGCAAAAGAGAATTTCCTAAGAGGAGGAAGAGCGCTCCATGGAGGTTAAGGGTAGGTGGTATCACTTTTACTCGTGGGAGTCAACCTGTTAGAACTGATTGTGTTTGGCCGCAGGAGAGGACGAGGCCCTTATGGGGTCGCAGATATCTGGGGTTCCCGTCCCTCCAGGGACCCTTCCCTGGCAGAGTGCAGCCTGTGTCCCAGGAGGACGAGCTGACGTTAGCCACTGGGCATCTCCGCAG
Seq C2 exon
GAACACTGGATTTCCCCGCAGAACGCCACGCACATCAAGCCCATGCACCCCACTTCAGTCCACGGCGTGGAGGACATGATCCGCTTGGGGGACCTCAATGAAGCCGGCATCCTGCGCAACCTGCTCATTAGATACCGAGACCATCTCATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development