GgaINT0104507 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192413169-192414498:-
Coord C1 exon
chr1:192414385-192414498
Coord A exon
chr1:192413322-192414384
Coord C2 exon
chr1:192413169-192413321
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGCCCTCGTTCTCTTCCCAGGAG
3' ss Score
11.19
Exon sequences
Seq C1 exon
GGGGATTATGTGTGGATGGACCTCAAAACCGGTCGGGAATTCGATGTTCCCATTGGAGCGGTGGTTAAACTGTGTGACTCTGGGCAGATCCAAGTTGTGGATGATGAAGGCAAT
Seq A exon
GTAAGTATAAAGGGCTGTGATTGCTCTTCAGCTCTGTAGCTGTTGTGGGCACAGGCCCCAGGTAGGATTAAATGCATGAGCTTAAGTTGTATTTGAAAGCCAAACTTGATTTGAATCTGATTAAAAGTGATGGGATTCTCTCCATTAATATCAGTGGATATTGGAACTAGGCCACAACTTCAGAAGCAGTCCCAGCTCTGAACCAAACTCCTGCCAAATAGAGACAGCACAACACTCCGATTCAAACATAGTTAATAGATCTAACTTTGCTCATTCCCAGTGTTTCCAGAAATATGAGGAAAAGGGCTTATAACAGGAGACTGGTGATGACTTTGCCACGGGCTTCTCATGTGTCCTTGGCAATAACTGTGAAAGGAAGATAACGTTGTGTCTCTACTTTTGTGGCTGTACTGGGAATGAAATAGTGAGAAGCTTCTTGAGTATAATGATGACACAGTCTGTTTTAAGGGAACACCTGTATTACAAGCGGAGAGTGACCTGAGGACATTTCTTGTCCTTTATCACTTTTGTTAAACTTTGGTTCAGCTGGATCCTTGTGTCTGGTTTGTAGTCACTTTTGAAGTCCTTTAGAATTGATCAGCCTGAATAAAATTCCATCAATAGAAGTGTAATTTACCACCCTGTGCATCTCCCTCTGCTTTTTTAAATCATCTTTTCTATTCTTAACAATGTTTTGCAGCAAAGGGCTAACCAGTGATGTAGAAATGTAGTTGTTTGAAAGGAAGAACAAACTGTTATTTGTTAAAAACTCCCTTGACATGCTGGATATCCATGCTGCCCCAGATTATGCTCAAGCCAAGATGGCTAACGTCTCATGTCTCTTGCCACTCTAGTAAACAAAAAGATGTTTTCCTTCTTCTGCTGTGAATCTCTCAAATGATTCCCTGACACGCTCCAGTGATAGAAGCTATAGTCTGTGTGCTATTGCTCTCCCATGCATGCTCTTCTACCTGGTCCTTCTGACTAGGGTAGACTGTTCATGCCCCTCATCCCAGTGGTTTACCATTTGGCTTATCTTTCCCTGCCCTCGTTCTCTTCCCAG
Seq C2 exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATTATGTGTGGATGGACC
R:
AGATGAGATGCTCCCGGTAGC
Band lengths:
265-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]