MmuINT0104562 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105251060-105255615:-
Coord C1 exon
chr7:105255502-105255615
Coord A exon
chr7:105251213-105255501
Coord C2 exon
chr7:105251060-105251212
Length
4289 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AAGCGCTATGCCCCCTGCAGGAA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GGGGACTATGTATGGATGGACCTGAAGTCAGGCCAGGAGTTTGATGTGCCCATCGGGGCCGTGGTGAAGCTCTGCGACTCGGGCCAGATCCAGGTGGTGGATGATGAAGACAAT
Seq A exon
GTGAGTAACCATCTTTCCTCCAATCCTACTTGGGAAGGCTACAATGGCAGGTGTCTAGAGTAGGAAGTGACCAGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACCAACCACATCCCTGCCGTGCACACAATCCTTCCTCCTCTACTCTGCAAGAGAGACTCCCTTTTGCTTTCGGTTTGCACATCTCCAAAACCTTCAGGTCATTCTGGGACATAGGGATGAGGGCTGTGTATGCTACATTGGGGAAGCTCGTTGGCATGGCTCAGTAGAGCTTTGGAGTCAGGCTCCTTCCTTTCAAGCCTCTGTTTCCTTTAATGAGACTCCCATGTGAGCCTGCGCGTGCTGGGCACCTCAGTACAGTCGGTGTCTGTCTAGGCATACTGGGCTTAGCCCTATTGGCTCGTGGAATTTATCATCCACATAGCCCTCGGGGAATCAGTCTCATGGAAAGGGACCCAGAAGTGCAAGCTTGGTAAGATTGTAATGAGCCTTGAGGAAAAGGGGCAAAAGTCAAAGGAAGGGGTGTGTCACTAGGGAGGCAGGCAGTCTGTGCGAGGGTCCGGAGGCCAGCCATGGGGACTCAAGCACAAGTTCACAGCATGTGTGTGTGCCTTTGCATGTGGGTGTTATGTGTATGGGTGTGCATGTGTATATGCATGTGTGCAAATGTGTGTCTCTGTGTGGACTCACGTGGGTGTCCACGGGGGGGGGGGCACAGATGCACTGCAGAGCACAGGAGTGTAGGATAGTAGAGACATAAAAGACCCAGGAAGCTTCTATTTGCCATAATTGGGATTGTGTCCAATGCTGTGCCTGGCTCTGGGGACAGTCTAGCCTGGATTCCTGCCTTAGACTTCAGGTCTGGAGAAAGCCAAGAGGGAATAGAGAGTACAGGTCCTGTTGGGACAAGGGAAGGCAGGCACAGGAGCTGTGGGCCTAGGGGAGGGAATCACTGAAATTCCGAGGGCCCCGCAGGGCCACCCCTCAGGACTCTTGACCTAACTTCTGTCTGGATTCTCAAGGCATCTGTGAAAGTCGGGGTAGACAATAACCATGACCCCATAAGGTTCATGTGACTCACAAAGTTCACAACCAATGGTGCTGGGATTAGAATTTAGGATGGCTACTTCTGCCTGTATTCCTGCCACCAGCATCTCAGCTCCAGGACTCAGGTTGTAGGAGAGAGGCTTGGCTCTAAGCTTGAGGCCAGATGCCCTTCCCTTCCTTCTGAGGCTCTACTTCTCCATGCAGGGAAGTCGCTGTTGTGCAGGGTGGGCTGGCAGCCGACAGACAGGCTGGTGAAGCTCCCCAGCTCTGAGGATGGGGACCAGGGACTCTACCTGAGGGGTAGAGTTTCACCTGGGTCAGGTTGCATGTCAGATGGTATCCTGTAACTCTGTGTCACTGGATCCTGAAGGTCCCCTCCCATCCTGCACACCCCTCCACCAAAGCCCTAAGAGTGGGGACTGCTGGGGGTGGGGCGAGACTGGCTAGGAACGTAGGATGTGCACAATTAGGGAAGCTGAGGCCTTGGGACCCTCTTTCCTATTTCCACTCCAGGCCGTCGTCCTCCACCTCTGTCCTCTCACTGACACGGTGGCCTGAGAGGAGGGACCTGGGCAGTCACATCTGCTTTGGCAGAGCTCAGTAGAGTGTTCAGAAAGGCTCTCGGGAGAACACTGCAGGGCCAAGGAAGCTCTGGTCTTCCTGCCTTTGCACAATGCATTCCTGTGCCTGCCAGGAAACCCCACCTCCCTCCACAGAACGCCTGTCCTCTTTCCCAGACAGCTCTTTCCCAGATGTCCCCCACCTACACACCCACCCGGTCCTCAGAACTGTCTGTGGCATTTCTATGTACCTTGCTGTCTTGCCCTCTCTCCCTACCTCCTTTTCTCTGTCTTTCTTCTGTGTCTCTGCCCTTTTTGTCTCTGTCAGTCTTCAGACACTTCCTGTCTTTTTCGCTGTCTCTGTCACTCTGTCCTTCAGAACCAATGCTCCCATACTAGGCTTGTTACACTTTGGCCTCTGCTGTGGGCTGTGGACCTTGACCAGAGAGCCGCTACCCTCAGCAGGACATCCTCCCACATAGGAGGTGGAGCTGTTCGGCTGCACTTCTTAACCTGGCCTGTCATTTAACATTGAGTCTGACTGCCACTGTGTAGCCAGGTCCCACTTCTCCGATATGTGTCGTGAAGAGAACACTCGTGGTCTTTGGAACCTGGTGGCTCAGGGTGTCCAACCCATACCTGGCCGAGTGTATCCCAGGCCCCAATGACCTGCACACCTGACAGGATTCTCCAGAGGCGATAACTTTCCCCTCCCCCTCTCCGGGACAGAAGCACTATTATCTTTGCTGTTTGTGGACTAGGCCCTAGCGGCCCAGGAAGGAGGTGTGAGGAGCCAGGAAGGTGGTGTAAACTGCTTGGCCTCTGTCCTGTCTCCCCCTCCCCCAGCTCCATAGAATTCACCAGCCAGGCCTGTGAAAGACACCCTGGTGGGGCCAGATTCCCATTGCAATTGCTCTTGCCAACCCCTTACCCACACCCTCCTGGAAGGACTGTTTTTGCTGGGCCCTCAGCCTGGCCTTCTTTCCTCACTTCTTATAGAAACTTTCTCTTCATTCAGGTCTCAGCTTAAATGCTCCCTCCTTGGAGCAACAGTCCTCAGTATCTGCCCACAGTAGCTCTGTTGAGTTAACTGACCTATTTTGGAAGGAATTATGGATCAGAGGGTGGGGCAAAAGGCAGTAAAGAGCTGCCCAGAGGCCCGGTCCTCTGGTTCCATGCAGGGGCCAGGGACAGGCAAAGGAAAATTTCCAAATGGATCAGCTTTTATCAGAGCGTTTGGGAGAGAGGAATGTTCCACATGGTGCTCGAAGTGTAGACAGGTCCTTGACGTCACTGCTGGGCCCCTGGTGCATTGGGAACGGCTGGGTGAGGGCCTGGAGTGGATTAAGTTTTCCTGCTGGAGTGCCATGGAATGCTAGGGAGGCAGGAGCAGGGCTCTGGCTGCCCCTTCTGAGCAGATGGGTGAGCTACCTCTTCACCCCTAGAAGCAGGGGCTGAGCTGAAGCCAGAGGAGAGGAAAAGTGTGGACCAGCGTGTGGCTGTCATGGCAGCAGCCATTAGAGAGTGGGATGGCCAAAGTCACGTGACCAGATCTGTCAGGAACAGCCTGGGACTGAAGCCAGATTCCTCCTAGGGACTCCCGTTGGAGCTGGCGACATCTAAGAACAGCTAGAGGAGATACAAGTTTGCAGGGTCTTGACAGGTGTGTTACATCTATTAGCAGACCTATGGATTTGGGAGGCTGGAGCAGAGAGGTTCCCTCTATCGGCAGAAACCATGTTTATTTTTGGCTCAAGGTGAGGGAAAGAGAGTGTGGGTGGGTTGGAGCCATAGCCGGGACCACAGGTCAGAGTCTGGTGATATGAAAAGGCTCTTGACCCCAGCGATCCCAGGAAATTGAGGCTCTATTCTCCAGAGGGAAGAATTCAAGACCTTCCTAGATGCCCTCGTCTGCCATCTGGTGGCTGCAGAGATTACTGCAAGAAAGTGAAGCACGCGCGCGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTGTAATTCCCACCTAGCTCACAGGTCCAGAAAGTCTCCCCTCTCCAGCTTCATATTGTTTACCAGCCAGGTCTGTGACGAACACTCTGGGGCCAGATGCCCATTGCTACGGTCCCTGCCCAGCCCTCACAAGCCACACTCACACAGCCTGGCCCCTGGCCTGGCCTTCCCTCTTCACTTCTTACAGAAAGTTTCTCTTCAGTCAGGTCTCTGCTAGTTCTCAGCACCTCCCCACAGCAGCTCTGAACAACTCCCTGACCATATTGCTTTATGTATTTGTTTACTGATGCCTGGATGTGAAACCGAGCCCTTCACATTTGAGTTACTGTGCTTCCATCTCTACCTCTCAAAGTGACTGGGGGACCTGAGGCCCTTAATGATAACCACTGGTGGAGGGCAACATCTTGGCCTTGCTCCCCTTATGTGTCTGTGGGATGTCTTGATGGGAAGAGACCAGTAAAATCCCCAGATTCAAGCCAGTCAGAACAGACACATCCTCTGCCCAGCCTGGGCTCAGGAGCAGCAGCTGACATGAAGCGCTATGCCCCCTGCAG
Seq C2 exon
GAACACTGGATATCCCCTCAGAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCACGGCGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATCCTTCGAAACCTTCTCATTCGCTACCGGGACCACCTCATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(38.4=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: