HsaINT0108942 @ hg38
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77142709-77147950:+
Coord C1 exon
chr11:77142709-77142822
Coord A exon
chr11:77142823-77147797
Coord C2 exon
chr11:77147798-77147950
Length
4975 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GACGTTCTGGCTCCCCGCAGGAA
3' ss Score
11.45
Exon sequences
Seq C1 exon
GGGGACCATGTGTGGATGGACCTGAGATTGGGGCAGGAGTTCGACGTGCCCATCGGGGCGGTGGTGAAGCTCTGCGACTCTGGGCAGGTCCAGGTGGTGGATGATGAAGACAAT
Seq A exon
GTGAGTAGTCCCCTCCCTCCTCCTGCCCCATGCCTTGGGGTCAGACCTGGGCTGACAGCTGCCTTGATGCAGGGAGATGATCGAAAGGAGATGGAGGCCATGCCCATGCCCCCACTTCTGCCTCTCAGATGCCCCCTTCCATGAGCTTTCCCCAGCACCCCAACAAGAGGGAACCCCTGCCTGCCTCAGGCTACTTGTTCTGTTTCCACAAGCACTTCAGTCCACTCTGCATGGTGTTAGAGATGTGTGTGTGTGTGGTGGGGTTTGAGTGCAGGGGGAGCAGGCTAGGAGCTCCTCAGACACAGAGGTGCTTTGGGGGCAGACTGCATTCAAATCCTATCTCGTCCATTTGTTAGCTGCGCAAACTTGGCCTAGTCTCCTTCCCTCCTGACCCTCAGTTTCCTCTTTGTAAAATGAGGATAATAATACGTATCTCACAGGGCTGTTGACCCATACATGAGATCACACGTGCAGAACACCTCAGTGAAGTTAGTGCTAGTCTGAAAGTTAAATGAACGTCCACAGCCTCACTGTGTTGGGTTACTGACATCACATGAATCCACTGTCCACCTTGACACTGCTCTGGAAATTGGTCTCACAGATTAACCCTTTATCTGTGGCCCAGAAGGAAAGGGACCCCAGAAGTGTAAGTTTTCTAGGTAATGATAGTGGGGCCTTGGGGAGGGAAGGAGAGGTCTGAAGTCAGGGGCCTGCCCCGGAGAAGGTGGCTGGTTCACGTGAGGGCCCGGAGGGGAAGCCCTGGGGCCTCTGAGCATGCGTGCACATGTGTGTGTCACTGGGGGTATGCAGATGGGGTGCAGAGCACACAGGGGCAGCTTAGCAGGGATATGAAGAATCCAGGGAGATTCAGCTCTGCCATAATGTGGGCTGTGCCCTGCGGTGTGCCAGGGGCTGGGACACAGAATTGGACTGAGTCCCTCTTAGCCTCCTGGTCTGAGGGAGGAGAGTCAGGAGAAAGAGGGTGCAGGGACTTGAAACTGAGGCTCTGCTGGGGACGACGGGAGGGCTCAGGACCCTCGAGGCCAGGTGCTTGACAAGGAGTGGGCAGGAGCATCCCAGATATTCCTGCAGCCCTCAGGTGCATCCCCTCAGAGTTTGCAAGACCCTTTAACCCAAGTTCTGTCTTTGGACTCTCATGGCATCTGTGGAAGGCAGGGAGGGAAAGAATTGTCATCCCATGAGGAAACTGAGGCACATAGAGGGACCACACAGCCAGTCACACAGCTAGTAAGTGATGGTGCTGGGATTAGAACCCAGGACCTCTGTCTTCTATGCATGAGTTTCCCCTGTCAGCATTATCTCAGCGGCGACTTTGGAGCTCAGATTCTGCTAATCACATTTTTGGCCCTTGGGCCGTAGAACCCAAGGCCTGCAATATCATTCCAGAGGCTCCAGTTCTAGGACCCTCTAGGAACCTACTATGAGGGTGCAGCCACAGAAGGGGAGGCACAGGCTGGGTGGCAGCATAGACGGGCCTGCTAACCTGCCCAGAGCCCCCAGGGTGGGGACCAGGGACTCTGTCTGCAGGCTTGAGTTTCACCTGGGTCATGTTGCATGTCAGATGGTGTCCCGTAACTGCGTCACCGAATCCCAAAGGTCCCCTCCCGCTTCTCCTCCACCCAGGCCCTGAGAGTGGGGGCTGCAGGAGGGGTGGGCATGACTGGCTGGCAGGGGCAGTTCGGGAGGCTGGGGTTTGCATCTGTGGCATTGGACCCCCAGGGCTTCCAGACCGCTCCTTCACAAGCCTTTCCCACCCCCATTCCATCCCCTCCCTCCCAACTCCAGGCTGTCATCTCTTACCCCTCTGTCTGCCCACAGACTCCTAGCAACTTGAGAGCAGGGAACAGGCCAGTCCCATCTGGTTCCCCAGAGTTCATCAAGGGGTCTGCCCAGGGAAGGCTCTTGGCAAAGACTCGCTGAGTGATGAATGAAAGGTTATGGTTTCAGTCCCCACTGGAATCCCAGTGTCTTGCCTTTGTCCAAGCCATTTCTGTTGCCAGATACACCCCTCCTTCCCTTCCTCTAGGGAGCAAGCTGTCCCTGCTCAGTCCAGGCCAGCTCTTTCCCAAAGGCATCCCTGGTCCCTGGAATTGACCATGTTCCCTTCCCCCAGTTGCTGGCATTTCTTCAGGCCAGGCCTCAGCTACTGCCCTGGTTACACTTTGGCCCCCGGTAGGTACCTGTGGACCTTGACCTGCAGGGTGCTGGCCTCTGTTGGGACTCCTCCCACGCAGGAAACAGTGGGAGCGGTGCAGCTACTGGGCAAGTCATTTTACCTCTTGAGTCCGGCTCGTCACTGTTAAATGGGGTCAGTGATTCTCTGTTAGGGATGTTAGAGAAGCAAATGTAAATCACAAGGCAGTAGAGTGACAATGCCCAGCTCTGGATGAGCATTTACCAAGCAGCAGCACTCTACAGACCTGGCAGGAGAAAGCTGTCAACAAAGATGGATGTCGTGATCACATCCATCAGTCCTCCCAAAACCCCTGGGAAGAAGGGATTCTTACTCTCATTCCCATTTCACAGCTGAGGACATGGAGGCTCAGGAGGGCAAATTGATGTGCTCAGGGGTCCGGGGTCAGGCCGTGGCTGAGCACTGTCAACCTGTGTGCTGAACTGTCATGGGGAGGGATGTGGGGACCTGAGGCTGGGGTCAAGTGGCGACAGCAGACAGCCTGCCCAGGAGCCCTCTCCCCTCCTGTCCACACTGGGGCCTGGGACAGAGGCAGGGAGCGGGGACCGCATGGGGGGATTTTCCAACAGGATCAGCTTGTATAAGAAATAGGGTGCCTGGGAGAGAGGAATGTTCCACACGGGACTGGAAAGTCCAGGCAGGTTCCCTAACAGTACCCACCCCCTCGCCCTGGGGAGGCTGCGTGAGAGCCTGCCCTGCGTTGAAGTGCTGCTGGCCCAGAAGTGCCGTGGAGTATCAGGGAAACTGGGGTGGGGGGCTCTGTCCAGCGCAGCCCCTAATCCCCCTGAGGGCCTGGGCAGGCTGCCACCCTCCTCCGAGCCTGTTTTCTCATGTGAAGTGAGGGGGCTGGAATGGGGGACTTCTGGGGTCTGTCCATGACTGACTTCTGCCTCTCATTCAGACCTGGTCCCCCGCAGTCACCAGCCAGCCATCTGTCCCATCAGAGGCTCCCTGCCACATCATTTGTGCCCGGCCCCTGTGTGAGGCACCGTGGCCTGAGATGTGGCCCTGGAGGCAGGGGGATGGCACAGATGGAGCATGTGAGGGTGGCCAGCACTGTCAGGGGAGGCTTCAGAAACTGGGAAACCTCCGAGCCAAGCCTCGAAGGCTAAGGAGAAAGAAGGTAGAGGGAACAGTGGAGCGAAGTCACAGAGGCCTTTGGGGACATGAAACCCGTGTTCCCTGGCTAGGATGTACCGGGGGTAGCTGGGATGGAGGTTAGGGGTCCTTGTGTCTAGCGCATGCTGGCCCTTGATGCCAGGCTGAGGAGCCCAGGGGAGTCAGGGAAGGGCTGAGAGCCCCAGAGTGACAGGGTCAGGAGGGTGCCTCAGGAAAGGCCCAGGGGACGAGGGATTTGATGGAAGAGCTGGAGGTAAGATGGGGACAGCAAGAGGCCGGGGCCGGGCCAGTGAGAGACGGTGGTCTCAATCAGGGTATGGGCTTGAGGGTGGCAAGGAGGGTACTGCCCACTCAGCAGCCTTTTAGAGGGTTGAATGGGCAGGACTGGGTGACCTGTTGGACTGGGGTGGTGGTGGGGGGAGCTGATGTCCAGATTCCTGCTAGTGTCCAGCTGTTGGGGTTGACTATGCCAGAAGGGACCTGGAGGAGGAGCAGGTGGGGGAGGACATGGCATGTGCATCACATCTGCTCAGCGAGTCTCAGGGCCTGAGCTGGGAGGTGGCAGAGAGGTCCCCTTTCCCCCCAGAAGGCAGGTCCTGGGGCTACTGGGTCATGGCATTTGGGGATGGGAGGGCTGACGTACTCTCAGGCAATGGCCACACTTCCCTGAGAGTCTGGGATTTTGCAAAGGTGCTGGAGACCCTCTGGGGGCGGGGAGGGCCCCAGGGCCCTGAGGAAACCAGGGCTTTGCCAGCTTGTTGAAAGAGCTGGTGCACTTCCCAAATGCTCACCCATCTGCCACCACAAGGCAGCTGGGGAATATTGCGGAGTAAGGAGAGCTGGGCAGGCAGCCTGTGTCCTCCACTTCAGCTCACACGTCCCAAGAGTTCACACCTCTTGCTCCCACAGGTCATCAGCAAGCCCCAGGAAATATCTCCTGGGTGGGTCCCCTTCTCCCCATCACCACTGCTACTGCCCTGCCTTCCAGCTTTCCCCTGAACCTGCCAAGCCTTTGCCAGCCTGAGGAGTTGTTTTGCTGTTCCCTGGGCCTGGAGCCCTCTGCCCCCCTCCCCCTAATCTTTTTACAGTGGTCTCTTTCTCTTCCTTCATGCCTCAGCTCATATGCCACCTCCTCGGAGGGGCAGTCCCTGACCACCACATCTCAAGCAGCTCCCCCCATGACTCTCCACCACATACACCTGTTGAGGTATTCTTGGCACTATCTGAAATCACTTTTTAATGTTTTTCTTTCTTTCTTTCTTTCTTTTTTACCGGAGCCTGAATTTGAGACCAAGCTTGTCTACTTCTAATTATTACCCTTTCCACTCCATCCTGCAAAGGGCCTGAGGGAACTCTGATCCCCTTACTGACAACAGTCAGATGGGGCCAAAATCCCTGCCCTGCCCACCTCTTAGGTCTGCGGGAAAATCCCCTAAGAGAAGGAGCGGTCCTTGAGGGGTAGAGGTGGCTGGTACCATCCTGACTGAACCCTGTTAGAACTGACAGTGTCTGGCTGCCAGAGAGGTCGAGGCCCTTACCCGGGTTGGCACTCACCCCGCGCTCCCGCCCGTCCCGGCCCCTTCCCCTGAAGTGCGCAGCCTGGGCCCCAGGAGAGCACGCTGACGTTCTGGCTCCCCGCAG
Seq C2 exon
GAACACTGGATCTCTCCGCAGAACGCAACGCACATCAAGCCTATGCACCCCACGTCGGTCCACGGCGTGGAGGACATGATCCGCCTGGGGGACCTCAACGAGGCGGGCATCTTGCGCAACCTGCTTATCCGCTACCGGGACCACCTCATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474:ENST00000409709:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development