RnoINT0097387 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163054847-163059391:-
Coord C1 exon
chr1:163059278-163059391
Coord A exon
chr1:163055000-163059277
Coord C2 exon
chr1:163054847-163054999
Length
4278 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AAGGGCTATGTTCCCTGCAGGAA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GGGGACTACGTGTGGATGGACCTGAAGTCGGGCCAGGAGTTCGATGTGCCCATCGGGGCCATGGTAAAGCTCTGTGAGTCTGGGCAGATCCAGGTGGTGGATGATGAAGGCAAT
Seq A exon
GTGAGTAACCATCTCTCCTCCAATGCGACTTGGGAAGGCTGCAGTGACAGGGGACCAGGAAGTGTCCAACCGCACGCGCATGCGCACGCACGCACGACGCATGCCATGAATACGACCCTTCCTCCTCTGCTTCTACAAGAGAGCTTCCTATTCACACATTTCCAAAACCTCAGGCCATTCTGGGACATAGGGTTGAAGGCTGGGTATGCTACGTTGGGGAAGCTCCTTGGCCTGGCTCAGTAGAGCTTCAGGGTCAGGTTCCTTCCTTCTAAGCCTCGGTTTCCTCTTTAACGAGATTCCCATGGGAGCCTGCATATGTTGAACACCTCAGTATAGTTGGTGTCCATCTAGGCATACTGGGCTTAGCCCTATTGGCCCGTGGAATTCATCATCCACATCGCCCTCAGAGAATCAGTCTCATGGGAAAAGACCCAGAAGTGCAAGCTTGGTAGATCGTGATGATGCAGCCTTGAGGAAGGGGACAAAGATCAAAGGAAAGGGGTGTGTCCCCCTAGGGAGGCGTGTGGTCTATGTGAGGACCATGCATAAGTTCACAGCATGTGTATGTGCCTTTGCATGTGGCTGTATGTGCACGTGCATGCATATGTGTATGCATGTGTGCACATGTATGTCTTTGTGCATGGGGGACATAGATGCAGTGAAGAGCATTGGAATGTAGTATAGTGGACACATAAGAGACCCAGAAAGCTCCTATTTGCCATAATTGGGATTGTGACCAGTGCTGTGCCTGGCTCTAGGGACAGCCTAGCCTGGGTTCCTGTCTTAGTCTCTTGGTCTGGAGAAAGCCGAGAGGGAAAAAAGAGTACACGTCCTGTCGGGACAAGGGAGGCAGGAACAGGAGCTGTGGGCCTAGGGCAGGGAATCACTGATATTCCTAGGCCACCCCTCAGGACTCTTGACCTTAACTTCTGTCTGGATTCTCAAGACATCTGGGAAAGTCAGGGCAGACAATAACTGTGACCCCATCGGGTGACTGTGAGTCACAAAGTTCACAAGCAGTGGTGCTGGGATTAGAATTTAGGACCGCTGCTTCTGGGTGCATTCCTGCCGCCAGCATCTCAGCAGCAACTCCAGACTCCAGTTGTAGGAGAGAGACTTGGCCCTGGGCTTGAGGCCAGAGAGCCCTTCCCTTCTTTCTGAGGCTCTAGTTCACTGTGCAGGGAAGCTGTTATGTGACTGAGTCATAGGGAGCTGCTGGGCAGGGTGGGCTGGCAGCTGACAGGCTGGTGAAGCTCCCTAGCTCTAAGGATGGGGAGAAGGGACTCTACCTGAGGGTACAGTTTCACCTGGATCAGGTTGCATGTCAGATGGTATCCTGTAACTCTGTGTCACTGGATCCTGAAGGTCCCCTCCCATCCTGCACACCCCTCCACCGAAGCCTAAGAGAGAGGACTTCGGGGGAGGGGAGAAAGTTGTAGGGGGGCGGTGAGACTGGCTAGGAACATAGGATTCGGACAATTATGGAAGCTGAGGCCTTGGGACCCTCTTTGCTATTTCCTTCCTCAACACTTTAGGCCATCGCCCTCCACAGTCCTTTCACAGACACAGTGGCCTGAGAGCAGGGCAGTCACCTCTGCTTCAGCAGGGCTCAACAGAGTGCTCAGAAAGGCTCTTTGGAGAACACTGCAGAACCAGGAAGCTCTCTGGTCTTCCTGCCTTTGCAAAATGCACTCCCATGCCTGCCAGCAGACCTCACCCTTCCTCAGCAGAACGCCTGGTCCCTTCCCCAGACAGTTCTTTCCCAGATGTGTCCCCAGTCTTCAGAACTGTCTGTGATATTCCTCTGTGCCCTGCTGTCTCTCCCTCTCTCCCCACCTTCTTCTCTGTCTTTCTTCTGTGTCTCTGCCTTTTTCCGTCTCTGTCAGACTTTAGACACTTCTTGTCAGTTTCTCTGTCTCTGTCACTCTGTCCTTCAGGACCAATGCTCCACTACTACGCTTGTTACTCTTTGGCCTCTGCTGTGGGCTGTGGACCTTGACCAGAGAGCTGCTGCCCTCAGCAGGGTGTCCTCCCACATAGGAGGTGGAGTTGTTTCTTAACCTGGTCATTCATTTCACACTGAGTCTGACTGCCACTGTGAACCCAGGTCCCACTTCTCCGTTGTGTGTTCTGAAGAGAACACTTGTGGTCTTTATAACCTGGTGGCTCAGGGTGTCCAGCCCATACGTGGCTGAGTGTATCCCAGGCCCCAGTGACCTGCACACCTGACAGGATTCTCCAGAGGAGATAACTTTCCCCTCCCCAAGGCGGAGGCACCATTGTCTTTGCTGTTTGTGGATGAGGCCCTGGAGGCCCAGGAAGGTGGTGTAAATTGCTTGGCCTCTGTCCTGTCTCCCCTCCCCCAGCTCCACAGAGTTCACCAGCCAGGCCTGTGAAAGACACCCTGGTGGGGCTGGATTCCCATTGCAACTGCCCCTGCCAACCCCTTACATGCCACGCCCACACTGTCTGGGAAGGGCTTTTTTTGCTGGTCTCTCAGCCTGGCCTTCTGTCCTCACTTCTTACAGGAACTTTCTCTTCTCTAAGGTCTCAGCTTAAATGCTTCCTCCTTGGGTCGATGGTCTTCAGTATCTGCCCACAGTAGCTCTGACTGACCTATTTTGGAAGGAATTGTGGACCAAAGGGAGGGGCGAAGAACAGTATCGAGCTGCCCAGAGGCCCTGTGCTCTGGTCCCACGCAGGGGCTAGGGGCAGGGGAAGGGAATTTTCCAAATGGATCAGCGTTTATCAGAGTGTTTGGGAGAGAGGAATGTTCCACATGGCACTGAAAGTGTAGCAGGTCCTTGACGTCACTGCTGGGCCCCTTGTGCGTTGGGAATGGCTGTGTGAGGGCCTGGATTGGATTAAGTTTTCCTGCTGGACTGCCATGGAATGTTAGGGAAGCTGGAGCAGGGCTCTGGCTGGCCCTGCCCTGCCCTGCCCCTTCTGAGTAGGCGGGTAAGCTACCTCTTCACCCCTAGAAGCAGGGGCTGAGCTAAGGCCCGAGGAGAGGAAAAGTGTGGATGAGAGTGTAGCTGCCATGGTGGCAGCCATTAGAGAGTGGGATGACCAAAGTCATGTGACCAGATCTGTCAGGGGCAGCCTGGGACTGAAGCTAGATTCCTGCTAGGAACTCCCGTTGGAGCTGATGACATCTAAGAACAGCTGGAGGAAATAAGTGTGTGTGTGTTTGGAGGGGGGGTCTTGACAGGTGTGTTACATCTATTAACAAACCTCTGGGTTTAGGAAGCTGGGAGCAGAGAGGTTCCTTCTACCGGCAGAAATTATGTTACACTATGTTTCTTTCTGGCTCAAGGTGAGGGAAAGTGAGTGTGGGTGGGCTAGGGCCTTAGCAGGGACCACAGGTCAGAGTGTGGTGATGTGAAAAGGCTTTTGACCCCTGCAATCCCAGGAAATTGAGGCTGTAGTCTTCGGAAGGAAGAGTTCAAGAACTTCCTAGGATGCCCTGGTCTGCCATCTAGTGGCTGTAGGGACATTGCAGGAAAAGAGCGGCGCTTGTGTGGCTTGTGTGTGTGTGTGTGTGTTGTGGTGTGTGTGTGTGGTGTGTGTGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATTGCAGTTCCTACCTCAGCTCACAGGTCCAGAAAGTCTCCCCACCCCAGCTCCATATACGTTACCATTCAAGCTTGTGAAGGCCATTCTGGGGCCAGATGCCCATTGCTACTGCCCCTGTCCACCCCTCACATGTCACACCCACACAGCCCAGGAAGGGTTGTTTTTCCTGGACCCAGGCCTGGCCTTTGCTTTTCATTTCTTACAGAAATTTTCTCTTCCTTCAGGATTCTGCTGGAGAGTTATTTCCCTGGAGAGGTGGTTCTCAGCACTTGCCCACAGTATCTCTGTAGAATTCTCTGAACATATTTTTTATGTATTGCTTACTGACCCCTGGATTTTAAGCCAAGCCCTTTCAATCCAAGTTACTGTGCTTTCTCTCTATCTTTCAAAGTGACTAGGGAACCTGAGCCCCTTAGTGATAACCACTGGTGGGAGTAACCACTGGTGGGGGTAACCACTGGTGGGGGTGACCACTGGTGGGGCAAAGTCTTTCCCCTGCTCCCCTTATGTGTCTATGGAGGAGAACTGTCTTGATGAGCAGAGACCAGTAAAATCCCCAGACTCAAGCCAGTCAGAGCTGATCACAGACCCAGTCTGGGCCCAGGAGCAGCAGCTGACAGGAAGGGCTATGTTCCCTGCAG
Seq C2 exon
GAACACTGGATTTCCCCTCAAAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCATGGTGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATTCTTCGAAACCTTCTCATTCGCTACCGGGACCATCTCATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]