GgaINT0104507 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198162116-198163463:-
Coord C1 exon
chr1:198163332-198163463
Coord A exon
chr1:198162269-198163331
Coord C2 exon
chr1:198162116-198162268
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGCCCTCGTTCTCTTCCCAGGAG
3' ss Score
11.19
Exon sequences
Seq C1 exon
TCTACCCTTTGTTTGCAGGGGGATTATGTGTGGATGGACCTCAAAACCGGTCGGGAATTCGATGTTCCCATTGGAGCGGTGGTTAAACTGTGTGACTCTGGGCAGATCCAAGTTGTGGATGATGAAGGCAAT
Seq A exon
GTAAGTATAAAGGGCTGTGATTGCTCTTCAGCTCTGTAGCTGTTGTGGGCACAGGCCCCAGGTAGGATTAAATGCATGAGCTTAAGTTGTATTTGAAAGCCAAACTTGATTTGAATCTGATTAAAAGTGATGGGATTCTCTCCATTAATATCAGTGGATATTGGAACTAGGCCACAACTTCAGAAGCAGTCCCAGCTCTGAACCAAACTCCTGCCAAATAGAGACAGCACAACACTCCGATTCAAACATAGTTAATAGATCTAACTTTGCTCATTCCCAGTGTTTCCAGAAATATGAGGAAAAGGGCTTATAACAGGAGACTGGTGATGACTTTGCCACGGGCTTCTCATGTGTCCTTGGCAATAACTGTGAAAGGAAGATAACGTTGTGTCTCTACTTTTGTGGCTGTACTGGGAATGAAATAGTGAGAAGCTTCTTGAGTATAATGATGACACAGTCTGTTTTAAGGGAACACCTGTATTACAAGCGGAGAGTGACCTGAGGACATTTCTTGTCCTTTATCACTTTTGTTAAACTTTGGTTCAGCTGGATCCTTGTGTCTGGTTTGTAGTCACTTTTGAAGTCCTTTAGAATTGATCAGCCTGAATAAAATTCCATCAATAGAAGTGTAATTTACCACCCTGTGCATCTCCCTCTGCTTTTTTAAATCATCTTTTCTATTCTTAACAATGTTTTGCAGCAAAGGGCTAACCAGTGATGTAGAAATGTAGTTGTTTGAAAGGAAGAACAAACTGTTATTTGTTAAAAACTCCCTTGACATGCTGGATATCCATGCTGCCCCAGATTATGCTCAAGCCAAGATGGCTAACGTCTCATGTCTCTTGCCACTCTAGTAAACAAAAAGATGTTTTCCTTCTTCTGCTGTGAATCTCTCAAATGATTCCCTGACACGCTCCAGTGATAGAAGCTATAGTCTGTGTGCTATTGCTCTCCCATGCATGCTCTTCTACCTGGTCCTTCTGACTAGGGTAGACTGTTCATGCCCCTCATCCCAGTGGTTTACCATTTGGCTTATCTTTCCCTGCCCTCGTTCTCTTCCCAG
Seq C2 exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTGTTTGCAGGGGGATT
R:
AGATGAGATGCTCCCGGTAGC
Band lengths:
279-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]