BtaINT0105907 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71880656-71881395:+
Coord C1 exon
chr17:71880656-71880848
Coord A exon
chr17:71880849-71881277
Coord C2 exon
chr17:71881278-71881395
Length
429 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GCAGCGCGGTGTGTCTCTAGGAA
3' ss Score
6.65
Exon sequences
Seq C1 exon
GCTTGCAGGGACTTCCTGGAACTAGCGGAGACGCACAGCCGGAAATGGCAGCGAGCCCTGCAGTATGAGCAGGAGCAGCGCGTCCACCTAGAGGAGACCATCGAGCAACTGGCCAAGCAGCACAACAGCCTCGAGCGCGCCTTCCGCAGCGCCCCGGGCCGGGCCGCCAACCCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GTGAGCGGGCGCCTGTCCACCCGCCCTGCTCCCTCGGCGTCCCCTCTGCCAGCTGGCTCGGCTTCTGCGGCCCCCCAGACGCACAACCCTCCTGCCCACACCTGTTGCCCGCCCGTGCCCCTGCACCCCCATGACGGGCACAGGCTCCAAAGACGAGCCCCGTGGCCAGACCTCCTGGGTGCCAGGTGGCCGCCCACCTAACCTGGGGCTCGGAGGTCACAGGCGCCCCGGGAAAGGGAAGCCGGGCCACTGGCCAGCATTTTGGGAGATGGGAGAAGCTTCCGGAAGGAGGGAGGCTCCCTGGGCAGGAGGCTGAGAGGGAAGCCCATTCCGGGGAAGGGAGCAGGGTGGCTGGCGGGTGACAGGCTCTGCACTGCCAGGGGCTGGGGGCAGGAGGCTGCCGGCTGAGGCAGCGCGGTGTGTCTCTAG
Seq C2 exon
GAAGCCTCTTCACCAGCAAAGCCGAGGACAGTGAGGACGATGAGGACACAGAGTACTTCGACGCCATGGAAGACGCCGCGTCCTTCATCACCGTGACCACTGAGCCCAGCGAGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTTCCTGGAACTAGCG
R:
GTCCTCGCTGGGCTCAGT
Band lengths:
303-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development