RnoINT0105696 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83956802-83957722:-
Coord C1 exon
chr14:83957530-83957722
Coord A exon
chr14:83956920-83957529
Coord C2 exon
chr14:83956802-83956919
Length
610 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
GAGTCTCTCTGTGTGTCCAGGAA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GCCTGTAAGGACTTCCTGGAACTAGCGGAGATTCACAGCCGGAAATGGCAGCGGGCTCTGAATTATGAGCAGGAGCAACGAGTCCACCTGGAGGAAACCATTGAGCAGTTGGCCAAGCAGCACAACAGTCTTGAACGGGCCTTCTGCAACACCCCTGGCGGGCCAGCCAGCTCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GTGTGTGTGATAGCAGGGCTGATGGGCTGGTGGGTACACTCCAGCACCGCCCTCACCCCCTTCTTCCCCTCTGGCTCTACTTCCTTTCCTCTCAGGTCCTAAAACCATGCGGGCTTGTGCCGAGGAGTACAGACTCCCTCTGTGGTGCGGCACGTCCCTTGCCTGTCACTAACTGCCAACATCCCCACCCACCATGTCGAAGTTCTAAGTCCCAATGAAGTTCAGTGAGCCCAGCTGTTCTCTCTGGGGCAGGGTTGGTCGGGTGTCGGGTGGCTGCCTACCTAACATAAGGCTAGGGCGCCCTGGGTAGGAAATCTGGGCCACCGGCAGTCTGACCAAACATGGACAGATCAGGAGGCTTCTGGAAAGAAGTATTTGAGCAATGACAAGTTGAAAAGATGTCCTGTCCTTGCAAAGCAAAGTCAGGGCAGCCGTAGCACAGGGCGACCAGGGTGGCCATAGCGCAGGGTGACCAGGATGACCAGGGCAGCCATAGCACAGGGTGACCAGGCTCAGGTGTCTTAAGTGGGCAGGTGGGGCTGGCGGGATAGAGGAGACTCCATCATGTGCACTCTGTGAGGTTGCAAACGGAGTCTCTCTGTGTGTCCAG
Seq C2 exon
GAAGCTTCTTGACTTCCAAAGGGGAGAACAGTGAAGAAGATGAAGATACTGAGTACTTTGATGCCATGGAAGACTCCACATCTTTCATCACCGTAATCACCGAGGCCAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTCCTGGAACTAGCGG
R:
GTCTTCCTTGGCCTCGGTGAT
Band lengths:
302-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]